Is there a relationship between the substrate preferences and structural flexibility of cytochromes P450?
Language English Country Netherlands Media print
Document type Journal Article, Research Support, Non-U.S. Gov't, Review
PubMed
22208528
DOI
10.2174/138920012798918372
PII: BSP/CDM/E-Pub/000225
Knihovny.cz E-resources
- MeSH
- Protein Conformation MeSH
- Humans MeSH
- Molecular Dynamics Simulation MeSH
- Spectrum Analysis methods MeSH
- Substrate Specificity MeSH
- Cytochrome P-450 Enzyme System chemistry MeSH
- Binding Sites MeSH
- Animals MeSH
- Check Tag
- Humans MeSH
- Animals MeSH
- Publication type
- Journal Article MeSH
- Research Support, Non-U.S. Gov't MeSH
- Review MeSH
- Names of Substances
- Cytochrome P-450 Enzyme System MeSH
In the last decades, the structural flexibility of cytochromes P450 has been extensively studied by spectroscopic and in silico methods. Here, both approaches are reviewed and compared. Comparison of both methods indicates that the individual cytochromes P450 differ significantly in the flexibilities of their substrate-binding active sites. This finding probably accounts for the large number of isoforms of these enzymes (there are fifty-seven known cytochrome P450 genes in the human genome) and their functional versatility. On the other hand, most of the known cytochrome P450s have a set of common structural features, with an overall structure consisting of a relatively flexible domain (the distal side), a more rigid domain (the heme-binding core) and a domain on the proximal side of the hemoprotein with intermediate flexibility. Substrate access and product egress channels of CYP enzymes are also important structural elements as the majority of these channels are located in the flexible distal side; the location, flexibility, and function of these channels are discussed.
References provided by Crossref.org
Uncovering of cytochrome P450 anatomy by SecStrAnnotator
ChannelsDB: database of biomacromolecular tunnels and pores
Lipid molecules can induce an opening of membrane-facing tunnels in cytochrome P450 1A2
MOLE 2.0: advanced approach for analysis of biomacromolecular channels
MOLEonline 2.0: interactive web-based analysis of biomacromolecular channels