Hyperphenylalaninemia in the Czech Republic: genotype-phenotype correlations and in silico analysis of novel missense mutations
Language English Country Netherlands Media print-electronic
Document type Journal Article, Research Support, Non-U.S. Gov't
PubMed
23357515
DOI
10.1016/j.cca.2013.01.006
PII: S0009-8981(13)00021-1
Knihovny.cz E-resources
- MeSH
- Phenotype MeSH
- Phenylketonurias diagnosis genetics MeSH
- Genetic Association Studies * MeSH
- Genotype MeSH
- Humans MeSH
- Mutation, Missense genetics MeSH
- Computer Simulation MeSH
- Molecular Dynamics Simulation MeSH
- Computational Biology MeSH
- Check Tag
- Humans MeSH
- Publication type
- Journal Article MeSH
- Research Support, Non-U.S. Gov't MeSH
- Geographicals
- Czech Republic MeSH
BACKGROUND: Hyperphenylalaninemia (HPA) is one of the most common inherited metabolic disorders caused by deficiency of the enzyme phenylalanine hydroxylase (PAH). HPA is associated with mutations in the PAH gene, which leads to reduced protein stability and/or impaired catalytic function. Currently, almost 700 different disease-causing mutations have been described. The impact of mutations on enzyme activity varies ranging from classical PKU, mild PKU, to non-PKU HPA phenotype. METHODS: We provide results of molecular genetic diagnostics of 665 Czech unrelated HPA patients, structural analysis of missense mutations associated with classical PKU and non-PKU HPA phenotype, and prediction of effects of 6 newly discovered HPA missense mutations using bioinformatic approaches and Molecular Dynamics simulations. RESULTS: Ninety-eight different types of mutations were indentified. Thirteen of these were novel (6 missense, 2 nonsense, 1 splicing, and 4 small gene rearrangements). Structural analysis revealed that classical PKU mutations are more non-conservative compared to non-PKU HPA mutations and that specific sequence and structural characteristics of a mutation might be critical when distinguishing between non-PKU HPA and classical PKU mutations. The greatest impact was predicted for the p.(Phe263Ser) mutation while other novel mutations p.(Asn167Tyr), p.(Thr200Asn), p.(Asp229Gly), p.(Leu358Phe), and p.(Ile406Met) were found to be less deleterious.
Clin Chim Acta. 2013 Nov 15;426:157 PubMed Zeman, Jiří [added]
References provided by Crossref.org
The Genetic Landscape and Epidemiology of Phenylketonuria
Bending of DNA duplexes with mutation motifs
Structural and Functional Impact of Seven Missense Variants of Phenylalanine Hydroxylase
Inherited ichthyoses: molecular causes of the disease in Czech patients
Computational study of missense mutations in phenylalanine hydroxylase