Evolutionary relationships within the Phytophthora cactorum species complex in Europe
Language English Country Netherlands Media print-electronic
Document type Journal Article, Research Support, Non-U.S. Gov't
PubMed
27268244
DOI
10.1016/j.funbio.2016.03.006
PII: S1878-6146(16)30020-4
Knihovny.cz E-resources
- Keywords
- Genotyping, Hybrids, Phylogeny, Taxonomy,
- MeSH
- Amplified Fragment Length Polymorphism Analysis MeSH
- DNA, Fungal genetics MeSH
- Fungal Proteins genetics MeSH
- Phylogeny * MeSH
- Genotype * MeSH
- DNA, Ribosomal Spacer genetics MeSH
- Evolution, Molecular * MeSH
- Phytophthora classification genetics MeSH
- Sequence Analysis, DNA MeSH
- Cluster Analysis MeSH
- Publication type
- Journal Article MeSH
- Research Support, Non-U.S. Gov't MeSH
- Geographicals
- Europe MeSH
- Names of Substances
- DNA, Fungal MeSH
- Fungal Proteins MeSH
- DNA, Ribosomal Spacer MeSH
The Phytophthora cactorum species complex in Europe is composed of P. cactorum, Phytophthora hedraiandra, and a hybrid species Phytophthora × serendipita. Evolutionary analyses using the amplified fragment length polymorphism (AFLP) method were carried out on 133 isolates from 19 countries. The AFLP data were complemented by sequence analysis of three genes (ITS region of ribosomal RNA gene, phenolic acid decarboxylase - Pheca I, and Cytochrome oxidase - Cox I), morphometric analysis and cardinal temperature data. The high proportion of clonal genotypes, low gene flow among groups, which was defined by the structure analysis, and low Nei's gene diversity confirms the homothallic life cycle of the groups. On the other hand, the ITS, Cox I and Pheca I sequence data support occasional hybridization between species. The structure K = 5 grouping revealed two groups of hybrid origin (C2 and F). While the C2 group resembles P. × serendipita, the F group includes Finnish isolates characterized by high oogonial abortion rates and slow growth. The morphological characters routinely used in identification of Phytophthora species are not useful for delimitation of species from the P. cactorum complex. Therefore, we discuss the status of P. hedraiandra as a separate species. The epitypification of P. cactorum is proposed.
References provided by Crossref.org
Bunyaviruses Affect Growth, Sporulation, and Elicitin Production in Phytophthora cactorum
Defense mechanisms promoting tolerance to aggressive Phytophthora species in hybrid poplar
Peronosporales Species Associated with Strawberry Crown Rot in the Czech Republic
Unravelling hybridization in Phytophthora using phylogenomics and genome size estimation