Novel PCR-RFLP system based on rpoB gene for differentiation of Cronobacter species
Language English Country Great Britain, England Media print-electronic
Document type Journal Article
PubMed
27889135
DOI
10.1016/j.fm.2016.08.004
PII: S0740-0020(15)30255-0
Knihovny.cz E-resources
- Keywords
- Cronobacter spp., PCR-RFLP, Species identification, rpoB gene,
- MeSH
- Genes, Bacterial * MeSH
- Cronobacter classification genetics MeSH
- DNA, Bacterial MeSH
- DNA Primers MeSH
- DNA-Directed RNA Polymerases genetics MeSH
- Phylogeny MeSH
- Food Contamination analysis MeSH
- Polymerase Chain Reaction economics methods MeSH
- Polymorphism, Restriction Fragment Length * MeSH
- Food Microbiology * MeSH
- Deoxyribonucleases, Type II Site-Specific metabolism MeSH
- Sequence Analysis, DNA MeSH
- Publication type
- Journal Article MeSH
- Names of Substances
- DNA, Bacterial MeSH
- DNA Primers MeSH
- DNA-Directed RNA Polymerases MeSH
- GATC-specific type II deoxyribonucleases MeSH Browser
- GCGC-specific type II deoxyribonucleases MeSH Browser
- GTAC-specific type II deoxyribonucleases MeSH Browser
- Deoxyribonucleases, Type II Site-Specific MeSH
Bacteria from the genus Cronobacter are opportunistic foodborne pathogens that can cause severe infections. More rapid, cost-effective and reliable methods are still required for the species identification of Cronobacter spp. In this study, we present a novel PCR-RFLP-based method that uses a newly designed pair of primers for the PCR-amplification of a partial rpoB gene sequence (1635 bp). The amplified products of DNA from 80 Cronobacter strains were separately digested with three restriction endonucleases (Csp6I, HinP1I, MboI). Using the obtained restriction patterns, a PCR-RFLP identification system was created to enable differentiation between all seven currently-known Cronobacter species. The functionality of our method was successfully verified on real food samples. Moreover, the relationships between the Cronobacter species were determined via a phylogenetic tree created from the RFLP patterns.
References provided by Crossref.org