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Novel PCR-RFLP system based on rpoB gene for differentiation of Cronobacter species

. 2017 Apr ; 62 () : 1-8. [epub] 20160826

Language English Country Great Britain, England Media print-electronic

Document type Journal Article

Links

PubMed 27889135
DOI 10.1016/j.fm.2016.08.004
PII: S0740-0020(15)30255-0
Knihovny.cz E-resources

Bacteria from the genus Cronobacter are opportunistic foodborne pathogens that can cause severe infections. More rapid, cost-effective and reliable methods are still required for the species identification of Cronobacter spp. In this study, we present a novel PCR-RFLP-based method that uses a newly designed pair of primers for the PCR-amplification of a partial rpoB gene sequence (1635 bp). The amplified products of DNA from 80 Cronobacter strains were separately digested with three restriction endonucleases (Csp6I, HinP1I, MboI). Using the obtained restriction patterns, a PCR-RFLP identification system was created to enable differentiation between all seven currently-known Cronobacter species. The functionality of our method was successfully verified on real food samples. Moreover, the relationships between the Cronobacter species were determined via a phylogenetic tree created from the RFLP patterns.

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