The CS algorithm: A novel method for high frequency oscillation detection in EEG
Jazyk angličtina Země Nizozemsko Médium print-electronic
Typ dokumentu časopisecké články
Grantová podpora
R01 NS078136
NINDS NIH HHS - United States
U24 NS063930
NINDS NIH HHS - United States
PubMed
28860077
PubMed Central
PMC5705572
DOI
10.1016/j.jneumeth.2017.08.023
PII: S0165-0270(17)30304-7
Knihovny.cz E-zdroje
- Klíčová slova
- Detection algorithm, Frequency dominance, HFO, High frequency oscillations, Ripples,
- MeSH
- algoritmy * MeSH
- artefakty MeSH
- časové faktory MeSH
- elektroencefalografie metody MeSH
- epilepsie diagnóza patofyziologie MeSH
- falešně pozitivní reakce MeSH
- hlodavci MeSH
- lidé MeSH
- mozek fyziologie patofyziologie MeSH
- počítačové zpracování signálu MeSH
- psi MeSH
- ROC křivka MeSH
- zvířata MeSH
- Check Tag
- lidé MeSH
- psi MeSH
- zvířata MeSH
- Publikační typ
- časopisecké články MeSH
BACKGROUND: High frequency oscillations (HFOs) are emerging as potentially clinically important biomarkers for localizing seizure generating regions in epileptic brain. These events, however, are too frequent, and occur on too small a time scale to be identified quickly or reliably by human reviewers. Many of the deficiencies of the HFO detection algorithms published to date are addressed by the CS algorithm presented here. NEW METHOD: The algorithm employs novel methods for: 1) normalization; 2) storage of parameters to model human expertise; 3) differentiating highly localized oscillations from filtering phenomena; and 4) defining temporal extents of detected events. RESULTS: Receiver-operator characteristic curves demonstrate very low false positive rates with concomitantly high true positive rates over a large range of detector thresholds. The temporal resolution is shown to be +/-∼5ms for event boundaries. Computational efficiency is sufficient for use in a clinical setting. COMPARISON WITH EXISTING METHODS: The algorithm performance is directly compared to two established algorithms by Staba (2002) and Gardner (2007). Comparison with all published algorithms is beyond the scope of this work, but the features of all are discussed. All code and example data sets are freely available. CONCLUSIONS: The algorithm is shown to have high sensitivity and specificity for HFOs, be robust to common forms of artifact in EEG, and have performance adequate for use in a clinical setting.
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Axmacher N, Elger CE, Fell J. Ripples in the medial temporal lobe are relevant for human memory consolidation. Brain. 2008;131:1806–1817. PubMed
Birot G, et al. Automatic detection of fast ripples. J Neurosci Methods. 2013;213(2):236–249. PubMed
Blanco JA, et al. Unsupervised classification of high-frequency oscillations in human neocortical epilepsy and control patients. J Neurophysiol. 2010;104(5):2900–2912. PubMed PMC
Blanco JA, et al. Data mining neocortical high-frequency oscillations in epilepsy and controls. Brain. 2012;134:2948–2959. PubMed PMC
Bragin A, et al. High-frequency oscillations in human brain. Hippocampus. 1999;9(2):137–142. Available at: http://www.ncbi.nlm.nih.gov/pubmed/12325068. PubMed
Burnos S, et al. Human intracranial high frequency oscillations (HFOs) detected by automatic time-frequency analysis. PLOS ONE. 2014;9(4):e94381. PubMed PMC
Buzsáki G, et al. High-frequency network oscillation in the hippocampus. Science (New York, NY) 1992;256(5059):1025–1027. PubMed
Buzsáki G, Silva FL. High frequency oscillations in the intact brain. Prog Neurobiol. 2012;98:241–249. PubMed PMC
Chaibi S, et al. Automated detection and classification of high frequency oscillations (HFOs) in human intracereberal EEG. Biomed Signal Process Control. 2013;8(6):927–934.
Donoho DL. An invitation to reproducible computational research. Biostatistics. 2010;11:385–388. PubMed
Dümpelmann M, et al. Automatic 80–250 Hz “ripple” high frequency oscillation detection in invasive subdural grid and strip recordings in epilepsy by a radial basis function neural network. Clin Neurophysiol. 2012;123(9):1721–1731. PubMed
Gardner AB, Worrell GA, Marsh E, Dlugos D, Litt B. Human and automated detection of high-frequency oscillations in clinical intracranial EEG recordings. Clin Neurophysiol. 2007;118:1134–1143. PubMed PMC
Gibbs J. Fourier’s Series. Nature Lix. 1899:200, 600.
Gross DW, Gotman J. Correlation of high-frequency oscillations with the sleep-wake cycle and cognitive activity in humans. Neuroscience. 1999;94(4):1005–1018. PubMed
Jacobs J, et al. High-frequency electroencephalographic oscillations correlate with outcome of epilepsy surgery. Ann Neurol. 2010;67(2):209–220. PubMed PMC
Jadhav SP, et al. Awake Hippocampal Sharp-Wave Ripples Support Spatial Memory. Science. 2012;336:1454–1458. PubMed PMC
Kucewicz MT, et al. High frequency oscillations are associated with cognitive processing in human recognition memory. Brain. 2014:1–14. PubMed PMC
Staba RJ, et al. Quantitative analysis of high-frequency oscillations (80–500 Hz) recorded in human epileptic hippocampus and entorhinal cortex. J Neurophysiol. 2002;88:1743–1752. PubMed
Staba RJ, et al. High-frequency oscillations recorded in human medial temporal lobe during sleep. Ann Neurol. 2004;56(1):108–115. PubMed
Urrestarazu E, Chander R, Dubeau F, Gotman J. Interictal high-frequency oscillations (100–500 Hz) in the intracerebral EEG of epileptic patients. Brain. 2007;130:2354–2366. PubMed
Worrell GA, et al. High-frequency oscillations and seizure generation in neocortical epilepsy. Brain. 2004;127(Pt 7):1496–1506. PubMed
Worrell GA, et al. High-frequency oscillations in human temporal lobe: simultaneous microwire and clinical macroelectrode recordings. Brain. 2008;131(Pt 4):928–937. PubMed PMC
Zelmann R, et al. A comparison between detectors of high frequency oscillations. Clin Neurophysiol. 2012;123(1):106–116. PubMed PMC
Zelmann R, et al. Automatic detector of High Frequency Oscillations for human recordings with macroelectrodes. 32nd Annual International Conference of the IEEE EMBS; Buenos Aires. 2010. pp. 2329–2333. PubMed PMC
Interictal invasive very high-frequency oscillations in resting awake state and sleep
Multi-feature localization of epileptic foci from interictal, intracranial EEG
Spatial variation in high-frequency oscillation rates and amplitudes in intracranial EEG