Zebrabase: An Intuitive Tracking Solution for Aquatic Model Organisms
Language English Country United States Media print-electronic
Document type Journal Article, Research Support, Non-U.S. Gov't
PubMed
30234459
PubMed Central
PMC6277078
DOI
10.1089/zeb.2018.1609
Knihovny.cz E-resources
- Keywords
- Django, Python, facility database, husbandry, tracking, zebrafish,
- MeSH
- Electronic Data Processing MeSH
- Animal Husbandry methods organization & administration MeSH
- Zebrafish * MeSH
- Databases, Factual MeSH
- Animals, Laboratory * MeSH
- Environmental Monitoring MeSH
- Software * MeSH
- Aquaculture methods organization & administration MeSH
- Animals MeSH
- Check Tag
- Animals MeSH
- Publication type
- Journal Article MeSH
- Research Support, Non-U.S. Gov't MeSH
Small fish species, such as zebrafish and medaka, are increasingly gaining popularity in basic research and disease modeling as a useful alternative to rodent model organisms. However, the tracking options for fish within a facility are rather limited. In this study, we present an aquatic species tracking database, Zebrabase, developed in our zebrafish research and breeding facility that represents a practical and scalable solution and an intuitive platform for scientists, fish managers, and caretakers, in both small and large facilities. Zebrabase is a scalable, cross-platform fish tracking database developed especially for fish research facilities. Nevertheless, this platform can be easily adapted for a wide variety of aquatic model organisms housed in tanks. It provides sophisticated tracking, reporting, and management functions that help keep animal-related records well organized, including a QR code functionality for tank labeling. The implementation of various user roles ensures a functional hierarchy and customized access to specific functions and data. In addition, Zebrabase makes it easy to personalize rooms and racks, and its advanced statistics and reporting options make it an excellent tool for creating periodic reports of animal usage and productivity. Communication between the facility and the researchers can be streamlined by the database functions. Finally, Zebrabase also features an interactive breeding history and a smart interface with advanced visualizations and intuitive color coding that accelerate the processes.
CZ OPENSCREEN Institute of Molecular Genetics AS CR v v i Prague Czech Republic
Department of Cell Differentiation Institute of Molecular Genetics AS CR v v i Prague Czech Republic
Department of Organic Chemistry Faculty of Science Charles University Prague Czech Republic
See more in PubMed
Monson CA, Sadler KC. Inbreeding depression and outbreeding depression are evident in wild-type zebrafish lines. Zebrafish 2010;7:189–197 PubMed PMC
Donnelly CJ, McFarland M, Ames A, Sundberg B, Springer D, Blauth P, et al. . JAX Colony Management System (JCMS): an extensible colony and phenotype data management system. Mamm Genome 2010;21:205–215 PubMed PMC
Cousin X, Daouk T, Pean S, Lyphout L, Schwartz ME, Begout ML. Electronic individual identification of zebrafish using radio frequency identification (RFID) microtags. J Exp Biol 2012;215:2729–2734 PubMed
Castranova D, Lawton A, Lawrence C, Baumann DP, Best J, Coscolla J, et al. . The effect of stocking densities on reproductive performance in laboratory zebrafish (Danio rerio). Zebrafish 2011;8:141–146 PubMed PMC
Ribas L, Valdivieso A, Diaz N, Piferrer F. Appropriate rearing density in domesticated zebrafish to avoid masculinization: links with the stress response. J Exp Biol 2017;220:1056–1064 PubMed
Spence R, Gerlach G, Lawrence C, Smith C. The behaviour and ecology of the zebrafish, Danio rerio. Biol Rev Camb Philos Soc 2008;83:13–34 PubMed
Hensley MR, Hassenplug E, McPhail R, Leung YF. ZeBase: an open-source relational database for zebrafish laboratories. Zebrafish 2012;9:44–49 PubMed
Anderson JL, Macurak ML, Halpern ME, Farber SA. A versatile aquatics facility inventory system with real-time barcode scan entry. Zebrafish 2010;7:281–287 PubMed PMC
Yakulov TA, Walz G. Zebrafish database: customizable, free, and open-source solution for facility management. Zebrafish 2015;12:462–469 PubMed
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