Hydrogen bonding in the crystal structure of phurcalite, Ca2[(UO2)3O2(PO4)2]·7H2O: single-crystal X-ray study and TORQUE calculations

. 2020 Jun 01 ; 76 (Pt 3) : 502-509. [epub] 20200527

Status PubMed-not-MEDLINE Jazyk angličtina Země Anglie, Velká Británie Médium print-electronic

Typ dokumentu časopisecké články

Perzistentní odkaz   https://www.medvik.cz/link/pmid32831267

Grantová podpora
20-11949S This research was supported by the Czech Science Foundation (GACR 20-11949S)

The crystal structure of phurcalite, Ca2[(UO2)3O2(PO4)2]·7H2O, orthorhombic, a = 17.3785 (9) Å, b = 15.9864 (8) Å, c = 13.5477 (10) Å, V = 3763.8 (4) Å3, space group Pbca, Z = 8 has been refined from single-crystal XRD data to R = 0.042 for 3182 unique [I > 3σ(I)] reflections and the hydrogen-bonding scheme has been refined by theoretical calculations based on the TORQUE method. The phurcalite structure is layered, with uranyl phosphate sheets of the phosphuranylite topology which are linked by extensive hydrogen bonds across the interlayer occupied by Ca2+ cations and H2O groups. In contrast to previous studies the approach here reveals five transformer H2O groups (compared to three expected by a previous study) and two non-transformer H2O groups. One of the transformer H2O groups is, nevertheless, not linked to any metal cation, which is a less frequent type of H2O bonding in solid state compounds and minerals. The structural formula of phurcalite has been therefore redefined as {Ca2(H2[3]O)5(H2[4]O)2}[(UO2)3O2(PO4)2], Z = 8.

Zobrazit více v PubMed

Astilleros, J. M., Pinto, A. J., Gonçalves, M. A., Sánchez-Pastor, N. & Fernández-Díaz, L. (2013). Environ. Sci. Technol. 47, 2636–2644. PubMed

Atencio, D., Neumann, R., Silva, A. J. G. C. & Mascarenhas, Y. P. (1991). Am. Mineral. 29, 95–105.

Brown, I. D. (2002). The Chemical Bond in Inorganic Chemistry: The Bond Valence Model, p. 278. Oxford University Press.

Brown, I. D. (2009). Chem. Rev. 109, 6858–6919. PubMed PMC

Buck, E. C., Brown, N. R. & Dietz, N. L. (1996). Environ. Sci. Technol. 30, 81–88.

Burns, P. C. (2005). Can. Mineral. 43, 1839–1894.

Cantrell, K. J., Deutsch, W. J. & Lindberg, M. J. (2011). Environ. Sci. Technol. 45, 1473–1480. PubMed

Catalano, J. G., McKinley, J. P., Zachara, J. M., Heald, S. M., Smith, S. C. & Brown, G. E. Jr (2006). Environ. Sci. Technol. 40, 2517–2524. PubMed

Colmenero, F., Bonales, L., Cobos, J. & Timón, V. (2017). J. Phys. Chem. C, 121, 5994–6001.

Colmenero, F., Bonales, L. J., Cobos, J. & Timón, V. (2018a). J. Solid State Chem. 253, 249–257.

Colmenero, F., Cobos, J. & Timón, V. (2018b). Inorg. Chem. 57, 4470–4481. PubMed

Colmenero, F., Fernández, A. M., Timón, V. & Cobos, J. (2018c). RSC Adv. 8, 24599–24616. PubMed PMC

Colmenero, F., Plášil, J., Cobos, J., Sejkora, J., Timón, V., Čejka, J. & Bonales, L. J. (2019a). RSC Adv. 9, 15323–15334. PubMed PMC

Colmenero, F., Plášil, J., Cobos, J., Sejkora, J., Timón, V., Čejka, J., Fernández, A. M. & Petříček, V. (2019c). RSC Adv. 9, 40708–40726. PubMed PMC

Colmenero, F., Plášil, J. & Sejkora, J. (2019b). Dalton Trans. 48, 16722–16736. PubMed

Dal Bo, F., Hatert, F. & Philippo, S. (2017). J. Geosci. pp. 87–95.

Demartin, F., Diella, V., Donzelli, S., Gramaccioli, C. M. & Pilati, T. (1991). Acta Cryst. B47, 439–446.

Finch, R. J. & Murakami, T. (1999). Rev. Mineral. Geochem. 38, 91–179.

Fuller, C. C., Bargar, J. R., Davis, J. A. & Piana, M. J. (2002). Environ. Sci. Technol. 36, 158–165. PubMed

Gagné, O. C. & Hawthorne, F. C. (2015). Acta Cryst. B71, 562–578. PubMed PMC

Ghazisaeed, S., Kiefer, B. & Plášil, J. (2019). RSC Adv. 9, 10058–10063. PubMed PMC

Ghazisaeed, S., Majzlan, J., Plášil, J. & Kiefer, B. (2018). J. Appl. Cryst. 51, 1116–1124.

Ghazisaeed, S., Minuddin, M., Nakotte, H. & Kiefer, B. (2020). J. Appl. Cryst. 53, 117–126.

Göb, S., Guhring, J. E., Bau, M. & Markl, G. (2013). Am. Mineral. 98, 530–548.

Hawthorne, F. C. (2012). Phys. Chem. Miner. 39, 841–874.

Hawthorne, F. C. (2015). Am. Mineral. 100, 696–713.

Ilton, E. S., Zachara, J. M., Moore, D. A., McKinley, J. P., Eckberg, A. D., Cahill, C. L. & Felmy, A. R. (2010). Environ. Sci. Technol. 44, 7521–7526. PubMed

Jorgensen, W. L., Chandrasekhar, J., Madura, J. D., Impey, R. W. & Klein, M. L. (1983). J. Chem. Phys. 79, 926–935.

Krivovichev, S. V. & Burns, P. C. (2007). In Structural Chemistry of Inorganic Actinide Compounds, edited by S. V. Krivovichev, P. C. Burns and I. G. Tananaev, pp. 95–182. Amsterdam: Elsevier.

Krivovichev, S. V. & Plášil, J. (2013). Mineralogy and crystallography of uranium In Uranium, from cradle to grave. MAC Short Course series, Vol. 43, edited by P. C. Burns & G. E. Sigmon, pp. 15–199. Mineralogical Association of Canada.

Lussier, A. J., Lopez, R. A. K. & Burns, P. C. (2016). Can. Mineral. 54, 177–283.

Maher, K., Bargar, J. R. & Brown, G. E. Jr (2013). Inorg. Chem. 52, 3510–3532. PubMed

Mills, S. J., Birch, W. D., Kolitsch, U., Mumme, W. G. & Grey, I. E. (2008). Am. Mineral. 93, 691–697.

Murakami, T., Ohnuki, T., Isobe, H. & Sato, T. (1997). Am. Mineral. 82, 888–889.

Pekov, I. V., Levitskiy, V. V., Krivovichev, S. V., Zolotarev, A. A., Bryzgalov, I. A., Zadov, A. E. & Chukanov, N. V. (2012). Eur. J. Mineral. 24, 913–922.

Petříček, V., Dušek, M. & Palatinus, L. (2014). Z. Kristallogr. 229, 345–352.

Piret, P. & Declercq, J.-P. (1983). Bull. Minéral. 106, 383–389.

Piret, P., Deliens, M. & Piret-Meunier, J. (1988). Bull. Minéral. 111, 443–449.

Plášil, J., Sejkora, J., Čejka, J., Novák, M., Vinals, J., Ondruš, P., Veselovský, F., Kacha, P., Jehlička, J., Golia, V. & Hloušek, J. (2010). Can. Mineral. 48, 335–350.

Plášil, J. (2014). J. Geosci. 59, 99–114.

Plášil, J., Kampf, A. R., Sejkora, J., Čejka, J., Škoda, R. & Tvrdý, J. (2018). J. Geosci. 63, 265–276.

Plášil, J., Sejkora, J., Čejka, J., Škoda, R. & Goliáš, V. (2009). J. Geosci. 54, 15–56.

Plášil, J., Sejkora, J., Ondruš, P., Veselovský, F., Beran, P. & Goliáš, V. (2006). J. Czech. Geol. Soc. 51, 149–158.

Rigaku (2019). CrysAlis CCD and CrysAlis RED. Rigaku Oxford Diffraction Ltd, Yarnton, Oxfordshire, UK.

Roh, Y., Lee, S. R., Choi, S. K., Elless, M. P. & Lee, S. Y. (2000). Soil Sediment. Contam. 9, 463–486.

Schindler, M. & Hawthorne, F. C. (2008). Can. Mineral. 46, 467–501.

Sheldrick, G. M. (2015). Acta Cryst. A71, 3–8. PubMed

Steciuk, G., Ghazisaeed, S., Kiefer, B. & Plášil, J. (2019). RSC Adv. 9, 19657–19661. PubMed PMC

Najít záznam

Citační ukazatele

Nahrávání dat ...

Možnosti archivace

Nahrávání dat ...