• This record comes from PubMed

The need for speed: drivers and consequences of accelerated replication forks

. 2025 Nov 06 ; 8 (1) : 1538. [epub] 20251106

Language English Country England, Great Britain Media electronic

Document type Journal Article, Review

Links

PubMed 41198817
PubMed Central PMC12592472
DOI 10.1038/s42003-025-08905-z
PII: 10.1038/s42003-025-08905-z
Knihovny.cz E-resources

The modulation of DNA replication dynamics has emerged as a key area of study in understanding genome stability and its perturbations in various physiological and pathological contexts. Replication fork rate is influenced by a variety of factors, including DNA repair pathways, origin firing, chromatin organization, transcription, and oncogenic signaling. This review highlights recent findings on the molecular mechanisms driving replication fork acceleration, focusing on scenarios such as PARP inhibition, oncogene activation, depletion of replication factors, and defects in Okazaki fragment processing. We discuss how reduced origin firing, R-loop resolution, and metabolic changes contribute to fork rate modulation, as well as the involvement of innate immune signaling, particularly through pathways such as cGAS-STING and ISG15. Special attention is given to consequences of accelerated replication forks for genome stability and their role in disease progression, particularly cancer. By unraveling the molecular mechanisms of fork acceleration, this Mini Review underscores its critical role in shaping genome integrity and cellular homeostasis, providing insights into future research directions and therapeutic strategies.

See more in PubMed

Conti, C. et al. Replication fork velocities at adjacent replication origins are coordinately modified during DNA replication in human cells. PubMed PMC

Zeman, M. K. & Cimprich, K. A. Causes and consequences of replication stress. PubMed PMC

Bellelli, R. & Boulton, S. J. Spotlight on the replisome: aetiology of DNA replication-associated genetic diseases. PubMed

Gaillard, H., Garcia-Muse, T. & Aguilera, A. Replication stress and cancer. PubMed

Maya-Mendoza, A. et al. High speed of fork progression induces DNA replication stress and genomic instability. PubMed

Flach, J. et al. Replication stress is a potent driver of functional decline in ageing haematopoietic stem cells. PubMed PMC

Cong, K. et al. Replication gaps are a key determinant of PARP inhibitor synthetic lethality with BRCA deficiency. PubMed PMC

Raso, M. C. et al. Interferon-stimulated gene 15 accelerates replication fork progression inducing chromosomal breakage. PubMed PMC

Sarni, D. et al. Topoisomerase 1-dependent R-loop deficiency drives accelerated replication and genomic instability. PubMed PMC

Burgers, P. M. J. & Kunkel, T. A. Eukaryotic DNA replication fork. PubMed PMC

Boos, D., Yekezare, M. & Diffley, J. F. Identification of a heteromeric complex that promotes DNA replication origin firing in human cells. PubMed

Kumagai, A., Shevchenko, A., Shevchenko, A. & Dunphy, W. G. Treslin collaborates with TopBP1 in triggering the initiation of DNA replication. PubMed PMC

Sedlackova, H. et al. Equilibrium between nascent and parental MCM proteins protects replicating genomes. PubMed

Yadav, A. K. & Polasek-Sedlackova, H. Quantity and quality of minichromosome maintenance protein complexes couple replication licensing to genome integrity. PubMed PMC

Stodola, J. L. & Burgers, P. M. Resolving individual steps of Okazaki-fragment maturation at a millisecond timescale. PubMed PMC

Georgescu, R. E. et al. Reconstitution of a eukaryotic replisome reveals suppression mechanisms that define leading/lagging strand operation. PubMed PMC

Yeeles, J. T. P., Janska, A., Early, A. & Diffley, J. F. X. How the eukaryotic replisome achieves rapid and efficient DNA replication. PubMed PMC

Garg, P., Stith, C. M., Sabouri, N., Johansson, E. & Burgers, P. M. Idling by DNA polymerase delta maintains a ligatable nick during lagging-strand DNA replication. PubMed PMC

Thakar, T. et al. Ubiquitinated-PCNA protects replication forks from DNA2-mediated degradation by regulating Okazaki fragment maturation and chromatin assembly. PubMed PMC

Yao, N. Y., Georgescu, R. E., Finkelstein, J. & O’Donnell, M. E. Single-molecule analysis reveals that the lagging strand increases replisome processivity but slows replication fork progression. PubMed PMC

Ercilla, A. et al. Physiological tolerance to ssDNA enables strand uncoupling during DNA replication. PubMed

Hanzlikova, H. et al. The importance of poly(ADP-ribose) polymerase as a sensor of unligated okazaki fragments during DNA replication. PubMed PMC

Jubin, T. et al. Poly ADP-ribose polymerase-1: beyond transcription and towards differentiation. PubMed

Ray Chaudhuri, A. & Nussenzweig, A. The multifaceted roles of PARP1 in DNA repair and chromatin remodelling. PubMed PMC

Lord, C. J. & Ashworth, A. PARP inhibitors: synthetic lethality in the clinic. PubMed PMC

Merchut-Maya, J. M., Bartek, J. & Maya-Mendoza, A. Regulation of replication fork speed: mechanisms and impact on genomic stability. PubMed

Vaitsiankova, A. et al. PARP inhibition impedes the maturation of nascent DNA strands during DNA replication. PubMed PMC

Murai, J. et al. Trapping of PARP1 and PARP2 by clinical PARP inhibitors. PubMed PMC

Pommier, Y., Sun, Y., Huang, S. N. & Nitiss, J. L. Roles of eukaryotic topoisomerases in transcription, replication and genomic stability. PubMed PMC

Strom, C. E. et al. Poly (ADP-ribose) polymerase (PARP) is not involved in base excision repair but PARP inhibition traps a single-strand intermediate. PubMed PMC

Diaz-Talavera, A., Montero-Conde, C., Leandro-Garcia, L. J. & Robledo, M. PrimPol: a breakthrough among DNA replication enzymes and a potential new target for cancer therapy. PubMed PMC

Piberger, A. L. et al. PrimPol-dependent single-stranded gap formation mediates homologous recombination at bulky DNA adducts. PubMed PMC

Quinet, A. et al. PRIMPOL-mediated adaptive response suppresses replication fork reversal in BRCA-deficient cells. PubMed PMC

Gonzalez-Acosta, D. et al. PrimPol-mediated repriming facilitates replication traverse of DNA interstrand crosslinks. PubMed PMC

Kang, Z. et al. BRCA2 associates with MCM10 to suppress PRIMPOL-mediated repriming and single-stranded gap formation after DNA damage. PubMed PMC

Rechkoblit, O. et al. Structural basis of DNA synthesis opposite 8-oxoguanine by human PrimPol primase-polymerase. PubMed PMC

Tirman, S. et al. Temporally distinct post-replicative repair mechanisms fill PRIMPOL-dependent ssDNA gaps in human cells. PubMed PMC

Mehta, K. P. M. et al. CHK1 phosphorylates PRIMPOL to promote replication stress tolerance. PubMed PMC

Straka, J., Khatib, J. B., Pale, L., Nicolae, C. M. & Moldovan, G. L. CAF-1 promotes efficient PrimPol recruitment to nascent DNA for single-stranded DNA gap formation. PubMed PMC

Dhoonmoon, A. et al. Translesion-synthesis-mediated bypass of DNA lesions occurs predominantly behind replication forks restarted by PrimPol. PubMed PMC

Giansanti, C. et al. MDM2 binds and ubiquitinates PARP1 to enhance DNA replication fork progression. PubMed

Machacova, Z., Chroma, K., Lukac, D., Protivankova, I. & Moudry, P. DNA polymerase alpha-primase facilitates PARP inhibitor-induced fork acceleration and protects BRCA1-deficient cells against ssDNA gaps. PubMed PMC

Wade, M., Li, Y. C. & Wahl, G. M. MDM2, MDMX and p53 in oncogenesis and cancer therapy. PubMed PMC

Castano, B. A. et al. The levels of p53 govern the hierarchy of DNA damage tolerance pathway usage. PubMed PMC

Genois, M. M. et al. CARM1 regulates replication fork speed and stress response by stimulating PARP1. PubMed PMC

Koh, K. P. et al. Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells. PubMed PMC

Maifrede, S. et al. TET2 and DNMT3A mutations exert divergent effects on DNA repair and sensitivity of leukemia cells to PARP inhibitors. PubMed PMC

Decout, A., Katz, J. D., Venkatraman, S. & Ablasser, A. The cGAS-STING pathway as a therapeutic target in inflammatory diseases. PubMed PMC

Chen, H. et al. cGAS suppresses genomic instability as a decelerator of replication forks. PubMed PMC

Moro, R. N. et al. Interferon restores replication fork stability and cell viability in BRCA-defective cells via ISG15. PubMed PMC

Shen, J. et al. PARPi triggers the STING-dependent immune response and enhances the therapeutic efficacy of immune checkpoint blockade independent of BRCAness. PubMed PMC

Kim, C., Wang, X. D. & Yu, Y. PARP1 inhibitors trigger innate immunity via PARP1 trapping-induced DNA damage response. PubMed PMC

Hanahan, D. Hallmarks of Cancer: New Dimensions. PubMed

Cybulla, E. & Vindigni, A. Leveraging the replication stress response to optimize cancer therapy. PubMed PMC

Simanshu, D. K., Nissley, D. V. & McCormick, F. RAS proteins and their regulators in humAN DISEAse. PubMed PMC

Maya-Mendoza, A. et al. Myc and Ras oncogenes engage different energy metabolism programs and evoke distinct patterns of oxidative and DNA replication stress. PubMed PMC

Rimmele, P. et al. Spi-1/PU.1 oncogene accelerates DNA replication fork elongation and promotes genetic instability in the absence of DNA breakage. PubMed

Maiani, E. et al. AMBRA1 regulates cyclin D to guard S-phase entry and genomic integrity. PubMed PMC

Pennycook, B. R. et al. E2F-dependent transcription determines replication capacity and S phase length. PubMed PMC

Ingham, P. W. & McMahon, A. P. Hedgehog signaling in animal development: paradigms and principles. PubMed

Tamayo-Orrego, L. et al. Sonic Hedgehog accelerates DNA replication to cause replication stress promoting cancer initiation in medulloblastoma. PubMed

Courbet, S. et al. Replication fork movement sets chromatin loop size and origin choice in mammalian cells. PubMed

Costantino, L. & Koshland, D. The Yin and Yang of R-loop biology. PubMed PMC

Crossley, M. P., Bocek, M. & Cimprich, K. A. R-loops as cellular regulators and genomic threats. PubMed PMC

Petermann, E., Lan, L. & Zou, L. Sources, resolution and physiological relevance of R-loops and RNA-DNA hybrids. PubMed

van den Berg, J. et al. Quantifying DNA replication speeds in single cells by scEdU-seq. PubMed PMC

Dominguez-Sanchez, M. S., Barroso, S., Gomez-Gonzalez, B., Luna, R. & Aguilera, A. Genome instability and transcription elongation impairment in human cells depleted of THO/TREX. PubMed PMC

Salas-Armenteros, I. et al. Human THO-Sin3A interaction reveals new mechanisms to prevent R-loops that cause genome instability. PubMed PMC

Bhatia, V. et al. BRCA2 prevents R-loop accumulation and associates with TREX-2 mRNA export factor PCID2. PubMed

Duxin, J. P. et al. Okazaki fragment processing-independent role for human Dna2 enzyme during DNA replication. PubMed PMC

Find record

Citation metrics

Logged in users only

Archiving options

Loading data ...