Artificial neural networking
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Introduction: Artificial neural networks are becoming an essential technology in data analysis, and their influence is starting to permeate the field of medicine. Experimental surgery has been a long-term subject of study of our lab; this is naturally reflected in our interest in other areas of modern technologies including artificial neural networks and their advancements. In the current issue, we would like to explore this aspect of technical progress. The main goal is to critically evaluate the strengths and weaknesses of artificial neural network technology concerning its use in clinical and experimental surgery. Methods: The article is focused on in-silico modeling, particularly on the potential of neural networks in terms of image data processing in medicine. The text briefly summarizes the historical development of deep learning neural networks and their basic principles. Furthermore, basic taxonomy tasks are presented. Finally, potential learning problems and possible solutions are also mentioned. Results: The article points out various possible uses of artificial neural networks in biological applications. Several biomedical applications of artificial neural networks are used to describe the division and principles of the most common tasks of machine learning and deep learning such as classification, detection, and segmentation. Conclusion: The application of artificial neural network methods in medicine and surgery offers a considerable potential; by learning directly from the data, they make it possible to avoid lengthy and subjective setting of parameters by an expert engineer. Nevertheless, the use of an unbalanced dataset can lead to unexpected, although traceable errors. The solution is to collect a dataset large enough to enable both learning and verification of proper functionality.
- Klíčová slova
- artificial neural network, dataset, deep learning, machine learning,
- MeSH
- lidé MeSH
- neuronové sítě * MeSH
- počítače MeSH
- počítačové zpracování obrazu metody MeSH
- strojové učení * MeSH
- Check Tag
- lidé MeSH
- Publikační typ
- časopisecké články MeSH
This study presents an application of the self-organizing migrating algorithm (SOMA) to train artificial neural networks for skin segmentation tasks. We compare the performance of SOMA with popular gradient-based optimization methods such as ADAM and SGDM, as well as with another evolutionary algorithm, differential evolution (DE). Experiments are conducted on the skin dataset, which consists of 245,057 samples with skin and non-skin labels. The results show that the neural network trained by SOMA achieves the highest accuracy (93.18%), outperforming ADAM (84.87%), SGDM (84.79%), and DE (91.32%). The visual evaluation also reveals the SOMA-trained neural network's accurate and reliable segmentation capabilities in most cases. These findings highlight the potential of incorporating evolutionary optimization algorithms like SOMA into the training process of artificial neural networks, significantly improving performance in image segmentation tasks.
- Klíčová slova
- Artificial neural networks, Computer vision, Optimization algorithm, SOMA, Skin segmentation, Swarm intelligence,
- MeSH
- algoritmy * MeSH
- kůže * diagnostické zobrazování MeSH
- lidé MeSH
- neuronové sítě * MeSH
- počítačové zpracování obrazu metody MeSH
- Check Tag
- lidé MeSH
- Publikační typ
- časopisecké články MeSH
Rapid development of computer technologies leads to the intensive automation of many different processes traditionally performed by human experts. One of the spheres characterized by the introduction of new high intelligence technologies substituting analysis performed by humans is sleep scoring. This refers to the classification task and can be solved - next to other classification methods - by use of artificial neural networks (ANN). ANNs are parallel adaptive systems suitable for solving of non-linear problems. Using ANN for automatic sleep scoring is especially promising because of new ANN learning algorithms allowing faster classification without decreasing the performance. Both appropriate preparation of training data as well as selection of the ANN model make it possible to perform effective and correct recognizing of relevant sleep stages. Such an approach is highly topical, taking into consideration the fact that there is no automatic scorer utilizing ANN technology available at present.
- MeSH
- elektroencefalografie metody MeSH
- lidé MeSH
- neuronové sítě * MeSH
- polysomnografie metody MeSH
- spánek fyziologie MeSH
- stadia spánku fyziologie MeSH
- Check Tag
- lidé MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- přehledy MeSH
A lower-extremity exoskeleton can facilitate the lower limbs' rehabilitation by providing additional structural support and strength. This article discusses the design and implementation of a functional prototype of lower extremity brace actuation and its wireless communication control system. The design provides supportive torque and increases the range of motion after complications reducing muscular strength. The control system prototype facilitates elevating a leg, gradually followed by standing and slow walking. The main control modalities are based on an Artificial Neural Network (ANN). The prototype's functionality was tested by time-angle graphs. The final prototype demonstrates the potential application of the ANN in the control system of exoskeletons for joint impairment therapy.
- Klíčová slova
- Keras, Lower-extremity, control system, exoskeleton, neural network, walking,
- MeSH
- chůze MeSH
- dolní končetina MeSH
- exoskeleton * MeSH
- neuronové sítě MeSH
- točivý moment MeSH
- Publikační typ
- časopisecké články MeSH
The artificial neural networks (ANN) are very often applied in many areas of toxicology for the solving of complex problems, such as the prediction of chemical compound properties and quantitative structure-activity relationship. The aim of this contribution is to give the basic knowledge about conception of ANN, theirs division and finally, the typical application of ANN will be discussed. Due to the diversity of architectures and adaptation algorithms, the ANNs are used in the broad spectrum of applications from the environmental processes modeling, through the optimization to quantitative structure-activity relationship (QSAR) methods. In addition, especially ANNs with Kohonen learning are very effective classification tool. The ANNs are mostly applied in cases, where the commonly used methods does not work.
Pathological pain subtypes can be classified as either neuropathic pain, caused by a somatosensory nervous system lesion or disease, or nociplastic pain, which develops without evidence of somatosensory system damage. Since there is no gold standard for the diagnosis of pathological pain subtypes, the proper classification of individual patients is currently an unmet challenge for clinicians. While the determination of specific biomarkers for each condition by current biochemical techniques is a complex task, the use of multimolecular techniques, such as matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS), combined with artificial intelligence allows specific fingerprints for pathological pain-subtypes to be obtained, which may be useful for diagnosis. We analyzed whether the information provided by the mass spectra of serum samples of four experimental models of neuropathic and nociplastic pain combined with their functional pain outcomes could enable pathological pain subtype classification by artificial neural networks. As a result, a simple and innovative clinical decision support method has been developed that combines MALDI-TOF MS serum spectra and pain evaluation with its subsequent data analysis by artificial neural networks and allows the identification and classification of pathological pain subtypes in experimental models with a high level of specificity.
- Klíčová slova
- MALDI-TOF MS, artificial intelligence, diagnostics, fibromyalgia, mass spectrometry, neuropathic pain,
- MeSH
- bolest diagnóza MeSH
- lidé MeSH
- neuronové sítě * MeSH
- spektrometrie hmotnostní - ionizace laserem za účasti matrice metody MeSH
- umělá inteligence * MeSH
- Check Tag
- lidé MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
Artificial neural network based modeling is a generic approach to understand and correlate different complex parameters of biological systems for improving the desired output. In addition, some new inferences can also be predicted in a shorter time with less cost and labor. As terpenoid indole alkaloid pathway in Vinca minor is very less investigated or elucidated, a strategy of elicitation with hydroxylase and acetyltransferase along with incorporation of various precursors from primary shikimate and secoiridoid pools via simultaneous employment of cyclooxygenase inhibitor was performed in the hairy roots of V. minor. This led to the increment in biomass accumulation, total alkaloid concentration, and vincamine production in selected treatments. The resultant experimental values were correlated with algorithm approaches of artificial neural network that assisted in finding the yield of vincamine, alkaloids, and growth kinetics using number of elicits. The inputs were the hydroxylase/acetyltransferase elicitors and cyclooxygenase inhibitor along with various precursors from shikimate and secoiridoid pools and the outputs were growth index (GI), alkaloids, and vincamine. The approach incorporates two MATLAB codes; GRNN and FFBPNN. Growth kinetic studies revealed that shikimate and tryptophan supplementation triggers biomass accumulation (GI = 440.2 to 540.5); while maximum alkaloid (3.7 % dry wt.) and vincamine production (0.017 ± 0.001 % dry wt.) was obtained on supplementation of secologanin along with tryptophan, naproxen, hydrogen peroxide, and acetic anhydride. The study shows that experimental and predicted values strongly correlate each other. The correlation coefficient for growth index (GI), alkaloids, and vincamine was found to be 0.9997, 0.9980, 0.9511 in GRNN and 0.9725, 0.9444, 0.9422 in FFBPNN, respectively. GRNN provided greater similarity between the target and predicted dataset in comparison to FFBPNN. The findings can provide future insights to calculate growth index, alkaloids, and vincamine in combination to different elicits.
- Klíčová slova
- Artificial neural network, Generalized regression neural network, MATLAB, Vinca minor,
- MeSH
- alkaloidy biosyntéza MeSH
- kořeny rostlin metabolismus MeSH
- neuronové sítě * MeSH
- Vinca metabolismus MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Názvy látek
- alkaloidy MeSH
The presented paper compares forecast of drought indices based on two different models of artificial neural networks. The first model is based on feedforward multilayer perceptron, sANN, and the second one is the integrated neural network model, hANN. The analyzed drought indices are the standardized precipitation index (SPI) and the standardized precipitation evaporation index (SPEI) and were derived for the period of 1948-2002 on two US catchments. The meteorological and hydrological data were obtained from MOPEX experiment. The training of both neural network models was made by the adaptive version of differential evolution, JADE. The comparison of models was based on six model performance measures. The results of drought indices forecast, explained by the values of four model performance indices, show that the integrated neural network model was superior to the feedforward multilayer perceptron with one hidden layer of neurons.
- MeSH
- koloběh vody MeSH
- lidé MeSH
- monitorování životního prostředí metody MeSH
- neuronové sítě * MeSH
- období sucha * MeSH
- předpověď MeSH
- teoretické modely * MeSH
- Check Tag
- lidé MeSH
- Publikační typ
- časopisecké články MeSH
Taking advantage of surface-enhanced Raman scattering (SERS) methodology with its unique ability to collect abundant intrinsic fingerprint information and noninvasive data acquisition we set up a SERS-based approach for recognition of physically induced DNA damage with further incorporation of artificial neural network (ANN). As a proof-of-concept application, we used the DNA molecules, where the one oligonucleotide (OND) was grafted to the plasmonic surface while complimentary OND was exposed to UV illumination with various exposure doses and further hybridized with the grafted counterpart. All SERS spectra of entrapped DNA were collected by several operators using the portable spectrometer, without any optimization of measurements procedure (e.g., optimization of acquisition time, laser intensity, finding of optimal place on substrate, manual baseline correction, etc.) which usually takes a significant amount of operator's time. The SERS spectra were employed as input data for ANN training, and the performance of the system was verified by predicting the class labels for SERS validation data, using a spectra dataset, which has not been involved in the training process. During that phase, accuracy higher than 98% was achieved with a level of confidence exceeding 95%. It should be noted that utilization of the proposed functional-SERS/ANN approach allows identifying even the minor DNA damage, almost invisible by control measurements, performed with common analytical procedures. Moreover, we introduce the advanced ANN design, which allows not only classifying the samples but also providing the ANN analysis feedback, which associates the spectral changes and chemical transformations of DNA structure.
- Klíčová slova
- Artificial neural network, DNA, Detection and recognition, Photo-damage, SERS,
- MeSH
- biosenzitivní techniky * MeSH
- DNA chemie izolace a purifikace MeSH
- kovové nanočástice chemie MeSH
- neuronové sítě MeSH
- oligonukleotidy chemie MeSH
- poškození DNA * MeSH
- Ramanova spektroskopie * MeSH
- zlato chemie MeSH
- Publikační typ
- časopisecké články MeSH
- Názvy látek
- DNA MeSH
- oligonukleotidy MeSH
- zlato MeSH
In this work the advantages of using artificial neural networks (ANNs) combined with experimental design (ED) to optimize the separation of amino acids enantiomers, with alpha-cyclodextrin as chiral selector, were demonstrated. The results obtained with the ED-ANN approach were compared with those of either the partial least-squares (PLS) method or the response surface methodology where experimental design and the regression equation were used. The ANN approach is quite general, no explicit model is needed, and the amount of experimental work can be decreased considerably.
- MeSH
- aminokyseliny analýza MeSH
- elektroforéza kapilární MeSH
- neuronové sítě * MeSH
- stereoizomerie MeSH
- Publikační typ
- časopisecké články MeSH
- Názvy látek
- aminokyseliny MeSH