Zygosity-based sex determination in a butterfly drives hypervariability of Masculinizer
Jazyk angličtina Země Spojené státy americké Médium print-electronic
Typ dokumentu časopisecké články, práce podpořená grantem
PubMed
38701204
PubMed Central
PMC11067997
DOI
10.1126/sciadv.adj6979
Knihovny.cz E-zdroje
- MeSH
- alely MeSH
- hmyzí proteiny genetika metabolismus MeSH
- homozygot MeSH
- motýli * genetika MeSH
- procesy určující pohlaví * genetika MeSH
- zvířata MeSH
- Check Tag
- mužské pohlaví MeSH
- ženské pohlaví MeSH
- zvířata MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Názvy látek
- hmyzí proteiny MeSH
Nature has devised many ways of producing males and females. Here, we report on a previously undescribed mechanism for Lepidoptera that functions without a female-specific gene. The number of alleles or allele heterozygosity in a single Z-linked gene (BaMasc) is the primary sex-determining switch in Bicyclus anynana butterflies. Embryos carrying a single BaMasc allele develop into WZ (or Z0) females, those carrying two distinct alleles develop into ZZ males, while (ZZ) homozygotes initiate female development, have mismatched dosage compensation, and die as embryos. Consequently, selection against homozygotes has favored the evolution of spectacular allelic diversity: 205 different coding sequences of BaMasc were detected in a sample of 246 females. The structural similarity of a hypervariable region (HVR) in BaMasc to the HVR in Apis mellifera csd suggests molecular convergence between deeply diverged insect lineages. Our discovery of this primary switch highlights the fascinating diversity of sex-determining mechanisms and underlying evolutionary drivers.
Department of Biological Sciences National University of Singapore Singapore 117543 Singapore
Department of Evolution Ecology and Behaviour University of Liverpool Liverpool L69 7ZB UK
Department of Zoology University of Cambridge Cambridge CB2 3EJ UK
Faculty of Science University of South Bohemia 370 05 České Budějovice Czech Republic
Netherlands eScience Center Science Park 402 1098 XH Amsterdam Netherlands
Zobrazit více v PubMed
Bachtrog D., Mank J. E., Peichel C. L., Kirkpatrick M., Otto S. P., Ashman T.-L., Hahn M. W., Kitano J., Mayrose I., Ming R., Perrin N., Ross L., Valenzuela N., Vamosi J. C.; Tree of Sex Consortium , Sex determination: Why so many ways of doing it? PLOS Biol. 12, e1001899 (2014). PubMed PMC
L. W. Beukeboom, N. Perrin,
Cline T. W., The PubMed
Beye M., Hasselmann M., Fondrk M. K., Page R. E., Omholt S. W., The gene PubMed
Kiuchi T., Koga H., Kawamoto M., Shoji K., Sakai H., Arai Y., Ishihara G., Kawaoka S., Sugano S., Shimada T., Suzuki Y., Suzuki M. G., Katsuma S., A single female-specific piRNA is the primary determiner of sex in the silkworm. Nature 509, 633–636 (2014). PubMed
Hall A. B., Basu S., Jiang X., Qi Y., Timoshevskiy V. A., Biedler J. K., Sharakhova M. V., Elahi R., Anderson M. A. E., Chen X.-G., Sharakhov I. V., Adelman Z. N., Tu Z., A male-determining factor in the PubMed PMC
Sharma A., Heinze S. D., Wu Y., Kohlbrenner T., Morilla I., Brunner C., Wimmer E. A., van de Zande L., Robinson M. D., Beukeboom L. W., Bopp D., Male sex in houseflies is determined by PubMed
Meccariello A., Salvemini M., Primo P., Hall B., Koskinioti P., Dalíková M., Gravina A., Gucciardino M. A., Forlenza F., Gregoriou M. E., Ippolito D., Monti S. M., Petrella V., Perrotta M. M., Schmeing S., Ruggiero A., Scolari F., Giordano E., Tsoumani K. T., Marec F., Windbichler N., Arunkumar K. P., Bourtzis K., Mathiopoulos K. D., Ragoussis J., Vitagliano L., Tu Z., Papathanos P. A., Robinson M. D., Saccone G., PubMed
Zou Y., Geuverink E., Beukeboom L. W., Verhulst E. C., van de Zande L., A chimeric gene paternally instructs female sex determination in the haplodiploid wasp PubMed
Traut W., Sahara K., Marec F., Sex chromosomes and sex determination in Lepidoptera. Sex. Dev. 1, 332–346 (2007). PubMed
Saccheri I. J., Whiteford S., Yung C. J., Van't Hof A. E., Recessive Z-linked lethals and the retention of haplotype diversity in a captive butterfly population. Heredity 125, 28–39 (2020). PubMed PMC
Jiggins F. M., Hurst G. D. D., Schulenburg J. H. G. V. D., Majerus M. E. N., Two male-killing PubMed
Charlat S., Hornett E. A., Dyson E. A., Ho P. P., Loc N. T., Schilthuizen M., Davies N., Roderick G. K., Hurst G. D., Prevalence and penetrance variation of male-killing PubMed
Sugimoto T. N., Kayukawa T., Shinoda T., Ishikawa Y., Tsuchida T., Misdirection of dosage compensation underlies bidirectional sex-specific death in Wolbachia-infected Ostrinia scapulalis. Insect Biochem. Mol. Biol. 66, 72–76 (2015). PubMed
Fukui T., Kawamoto M., Shoji K., Kiuchi T., Sugano S., Shimada T., Suzuki Y., Katsuma S., The endosymbiotic bacterium PubMed PMC
Verhulst E. C., Van de Zande L., Double nexus — PubMed PMC
Fukui T., Kiuchi T., Shoji K., Kawamoto M., Shimada T., Katsuma S., In vivo masculinizing function of the PubMed
Wang X.-Y., Zheng Z.-Z., Song H.-S., Xu Y.-Z., Conserved RNA cis-elements regulate alternative splicing of Lepidopteran PubMed
Suzuki M. G., Ohbayashi F., Mita K., Shimada T., The mechanism of sex-specific splicing at the PubMed
Gu L., Reilly P. F., Lewis J. J., Reed R. D., Andolfatto P., Walters J. R., Dichotomy of dosage compensation along the neo Z chromosome of the monarch butterfly. Curr. Biol. 29, 4071–4077.e3 (2019). PubMed PMC
Katsuma S., Kiuchi T., Kawamoto M., Fujimoto T., Sahara K., Unique sex determination system in the silkworm, PubMed PMC
Pospíšilová K., Van't Hof A. E., Yoshido A., Kružíková R., Visser S., Zrzavá M., Bobryshava K., Dalíková M., Marec F., PubMed
Sainudiin R., Durrett R. T., Aquadro C. F., Nielsen R., Microsatellite mutation models: Insights from a comparison of humans and chimpanzees. Genetics 168, 383–395 (2004). PubMed PMC
Katsuma S., Sugano Y., Kiuchi T., Shimada T., Two conserved cysteine residues are required for the masculinizing activity of the silkworm Masc protein. J. Biol. Chem. 290, 26114–26124 (2015). PubMed PMC
Kiuchi T., Sugano Y., Shimada T., Katsuma S., Two CCCH-type zinc finger domains in the Masc protein are dispensable for masculinization and dosage compensation in PubMed
Sugano Y., Kokusho R., Ueda M., Fujimoto M., Tsutsumi N., Shimada T., Kiuchi T., Katsuma S., Identification of a bipartite nuclear localization signal in the silkworm Masc protein. FEBS Lett. 590, 2256–2261 (2016). PubMed
Chiu C. H., Wang Y. T., Walther B. A., Chao A., An improved nonparametric lower bound of species richness via a modified Good-Turing frequency formula. Biometrics 70, 671–682 (2014). PubMed
Hasselmann M., Beye M., Signatures of selection among sex-determining alleles of the honey bee. Proc. Natl. Acad. Sci. U.S.A. 101, 4888–4893 (2004). PubMed PMC
Muirhead C. A., Consequences of population structure on genes under balancing selection. Evolution 55, 1532–1541 (2001). PubMed
Schierup M. H., Vekemans X., Charlesworth D., The effect of subdivision on variation at multi-allelic loci under balancing selection. Genet. Res. 76, 51–62 (2000). PubMed
de Jong M. A., Wahlberg N., van Eijk M., Brakefield P. M., Zwaan B. J., Mitochondrial DNA signature for range-wide populations of PubMed PMC
Zareba J., Blazej P., Laszkiewicz A., Sniezewski L., Majkowski M., Janik S., Cebrat M., Uneven distribution of complementary sex determiner ( PubMed PMC
Ding G., Hasselmann M., Huang J., Roberts J., Oldroyd B. P., Gloag R., Global allele polymorphism indicates a high rate of allele genesis at a locus under balancing selection. Heredity 126, 163–177 (2021). PubMed PMC
Beye M., Seelmann C., Gempe T., Hasselmann M., Vekemans X., Fondrk M. K., Page R. E. Jr., Gradual molecular evolution of a sex determination switch through incomplete penetrance of femaleness. Curr. Biol. 23, 2559–2564 (2013). PubMed
Van't Hof A. E., Marec F., Saccheri I. J., Brakefield P. M., Zwaan B. J., Cytogenetic characterization and AFLP-based genetic linkage mapping for the butterfly PubMed PMC
Nowell R. W., Elsworth B., Oostra V., Zwaan B. J., Wheat C. W., Saastamoinen M., Saccheri I. J., Van't Hof A. E., Wasik B. R., Connahs H., Aslam M. L., Kumar S., Challis R. J., Monteiro A., Brakefield P. M., Blaxter M., A high-coverage draft genome of the mycalesine butterfly PubMed PMC
Otte M., Netschitailo O., Weidtkamp-Peters S., Seidel C. A. M., Beye M., Recognition of polymorphic Csd proteins determines sex in the honeybee. Sci. Adv. 9, eadg4239 (2023). PubMed PMC
Leducq J. B., Llaurens V., Castric V., Saumitou-Laprade P., Hardy O. J., Vekemans X., Effect of balancing selection on spatial genetic structure within populations: Theoretical investigations on the self-incompatibility locus and empirical studies in PubMed PMC
Hasselmann M., Vekemans X., Pflugfelder J., Koeniger N., Koeniger G., Tingek S., Beye M., Evidence for convergent nucleotide evolution and high allelic turnover rates at the complementary sex determiner gene of Western and Asian honeybees. Mol. Biol. Evol. 25, 696–708 (2008). PubMed
Charlesworth D., Balancing selection and its effects on sequences in nearby genome regions. PLOS Genet. 2, e64 (2006). PubMed PMC
Duplouy A., Brattström O., PubMed PMC
Dyson E. A., Kamath M. K., Hurst G. D. D., Wolbachia infection associated with all-female broods in PubMed
Sugimoto T. N., Ishikawa Y., A male-killing PubMed PMC
Kageyama D., Ohno M., Sasaki T., Yoshido A., Konagaya T., Jouraku A., Kuwazaki S., Kanamori H., Katayose Y., Narita S., Miyata M., Riegler M., Sahara K., Feminizing PubMed PMC
Katsuma S., Hirota K., Matsuda-Imai N., Fukui T., Muro T., Nishino K., Kosako H., Shoji K., Takanashi H., Fujii T., Arimura S. I., Kiuchi T., A PubMed PMC
Hornett E. A., Moran B., Reynolds L. A., Charlat S., Tazzyman S., Wedell N., Jiggins C. D., Hurst G. D. D., The evolution of sex ratio distorter suppression affects a 25 cM genomic region in the butterfly PubMed PMC
Hornett E. A., Kageyama D., Hurst G. D. D., Sex determination systems as the interface between male-killing bacteria and their hosts. Proc. R. Soc. B 289, 20212781 (2022). PubMed PMC
Hedrick P. W., What is the evidence for heterozygote advantage selection? Trends Ecol. Evol. 27, 698–704 (2012). PubMed
Prakash A., Monteiro A., PubMed PMC
Frey U. H., Bachmann H. S., Peters J., Siffert W., PCR-amplification of GC-rich regions: 'Slowdown PCR'. Nat. Protoc. 3, 1312–1317 (2008). PubMed
Chen S., Ultrafast one-pass FASTQ data preprocessing, quality control, and deduplication using fastp. iMeta 2, e107 (2023). PubMed PMC
Nei M., Gojobori T., Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3, 418–426 (1986). PubMed
Tamura K., Stecher G., Kumar S., MEGA11: Molecular Evolutionary Genetics Analysis Version 11. Mol. Biol. Evol. 38, 3022–3027 (2021). PubMed PMC
A. Chao, C.-H. Chiu, "Species Richness: Estimation and Comparison" in
A. Chao, K. H. Ma, T. C. Hsieh, C. H. Chiu, SpadeR (Species-richness Prediction And Diversity Estimation in R): An R package in CRAN. (2016).
R Core Team. (R Foundation for Statistical Computing, Vienna, Austria, 2022).
Ranwez V., Harispe S., Delsuc F., Douzery E. J. P., MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons. PLOS ONE 6, e22594 (2011). PubMed PMC
Lücking R., Hodkinson B. P., Stamatakis A., Cartwright R. A., PICS-Ord: Unlimited coding of ambiguous regions by pairwise identity and cost scores ordination. BMC Bioinform. 12, 10 (2011). PubMed PMC
Cartwright R. A., Ngila: Global pairwise alignments with logarithmic and affine gap costs. Bioinformatics 23, 1427–1428 (2007). PubMed PMC
Kozlov A. M., Darriba D., Flouri T., Morel B., Stamatakis A., RAxML-NG: A fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference. Bioinformatics 35, 4453–4455 (2019). PubMed PMC
Kamvar Z. N., Tabima J. F., Grünwald N. J., Poppr: An R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction. PeerJ 2, e281 (2014). PubMed PMC
Patro R., Duggal G., Love M. I., Irizarry R. A., Kingsford C., Salmon provides fast and bias-aware quantification of transcript expression. Nat. Methods 14, 417–419 (2017). PubMed PMC
Pertea M., Pertea G. M., Antonescu C. M., Chang T. C., Mendell J. T., Salzberg S. L., StringTie enables improved reconstruction of a transcriptome from RNA-seq reads. Nat. Biotechnol. 33, 290–295 (2015). PubMed PMC
Harrison P. W., Mank J. E., Wedell N., Incomplete sex chromosome dosage compensation in the Indian meal moth, PubMed PMC
Love M. I., Huber W., Anders S., Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 15, 550 (2014). PubMed PMC
Soneson C., Love M. I., Robinson M. D., Differential analyses for RNA-seq: Transcript-level estimates improve gene-level inferences. F1000Res 4, 1521 (2015). PubMed PMC
R. J. Challis, S. Kumar, K. K. Dasmahapatra, C. D. Jiggins, M. Blaxter, Lepbase: The lepidopteran genome database. bioRxiv 10.1101/056994 (2016).
Priyam A., Woodcroft B. J., Rai V., Moghul I., Munagala A., Ter F., Chowdhary H., Pieniak I., Maynard L. J., Gibbins M. A., Moon H., Davis-Richardson A., Uludag M., Watson-Haigh N. S., Challis R., Nakamura H., Favreau E., Gómez E. A., Pluskal T., Leonard G., Rumpf W., Wurm Y., Sequenceserver: A modern graphical user interface for custom BLAST databases. Mol. Biol. Evol. 36, 2922–2924 (2019). PubMed PMC
Banerjee T. D., Monteiro A., CRISPR-Cas9 mediated genome editing in PubMed PMC
Šíchová J., Nguyen P., Dalíková M., Marec F., Chromosomal evolution in tortricid moths: Conserved karyotypes with diverged features. PLOS ONE 8, e64520 (2013). PubMed PMC
Traut W., Marec F., Sex chromatin in Lepidoptera. Q. Rev. Biol. 71, 239–256 (1996). PubMed
Fuková I., Traut W., Vítková M., Nguyen P., Kubíčková S., Marec F., Probing the W chromosome of the codling moth, PubMed
Zrzavá M., Hladová I., Dalíková M., Šíchová J., Õunap E., Kubíčková S., Marec F., Sex chromosomes of the iconic moth PubMed PMC
Kubickova S., Cernohorska H., Musilova P., Rubes J., The use of laser microdissection for the preparation of chromosome-specific painting probes in farm animals. Chromosome Res. 10, 571–577 (2002). PubMed
Beldade P., Saenko S. V., Pul N., Long A. D., A gene-based linkage map for PubMed PMC
Traut W., Sahara K., Otto T. D., Marec F., Molecular differentiation of sex chromosomes probed by comparative genomic hybridization. Chromosoma 108, 173–180 (1999). PubMed
A. Yoshido, K. Sahara, Y. Yasukochi, "Silk moths (Lepidoptera)" in
Nguyen P., Sýkorová M., Šíchová J., Kůta V., Dalíková M., Čapková Frydrychová R., Neven L. G., Sahara K., Marec F., Neo-sex chromosomes and adaptive potential in tortricid pests. Proc. Nat. Acad. Sci. U. S. A. 110, 6931–6936 (2013). PubMed PMC
Yoshido A., Šíchová J., Pospíšilová K., Nguyen P., Voleníková A., Šafář J., Provazník J., Vila R., Marec F., Evolution of multiple sex-chromosomes associated with dynamic genome reshuffling in PubMed PMC
Pfaffl M. W., A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 29, e45 (2001). PubMed PMC
Van't Hof A. E., Zwaan B. J., Saccheri I. J., Daly D., Bot A. N. M., Brakefield P. M., Characterization of 28 microsatellite loci for the