Phormidium
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Cyanobacteria are well adapted to freezing and desiccation; they have been proposed as possible survivors of comprehensive Antarctic glaciations. Filamentous types from the order Oscillatoriales, especially the species Phormidium autumnale Kützing ex Gomont 1892, have widely diverse morphotypes that dominate in Antarctic aquatic microbial mats, seepages, and wet soils. Currently little is known about the dispersion of cyanobacteria in Antarctica and of their population history. We tested the hypothesis that cyanobacteria survived Antarctic glaciations directly on site after the Gondwana breakup by using the relaxed and strict molecular clock in the analysis of the 16S rRNA gene. We estimated that the biogeographic history of Antarctic cyanobacteria belonging to P. autumnale lineages has ancient origins. The oldest go further back in time than the breakup of Gondwana and originated somewhere on the supercontinent between 442 and 297 Ma. Enhanced speciation rate was found around the time of the opening of the Drake Passage (c. 31-45 Ma) with beginning of glaciations (c. 43 Ma). Our results, based primarily on the strains collected in maritime Antarctica, mostly around James Ross Island, support the hypothesis that long-term survival took place in glacial refuges. The high morphological diversification of P. autumnale suggested the coevolution of lineages and formation of complex associations with different morphologies, resulting in a specific endemic Antarctic cyanobacterial flora.
- MeSH
- Bayesova věta MeSH
- biologická evoluce * MeSH
- DNA bakterií genetika MeSH
- fylogeneze * MeSH
- modely genetické MeSH
- RNA ribozomální 16S genetika MeSH
- sinice klasifikace genetika MeSH
- vznik druhů (genetika) MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Geografické názvy
- Antarktida MeSH
Bacterial populations display high heterogeneity in viability and physiological activity at the single-cell level, especially under stressful conditions. We demonstrate a novel staining protocol for multiparameter assessment of individual cells in physiologically heterogeneous populations of cyanobacteria. The protocol employs fluorescent probes, i.e., redox dye 5-cyano-2,3-ditolyl tetrazolium chloride, 'dead cell' nucleic acid stain SYTOX Green, and DNA-specific fluorochrome 4',6-diamidino-2-phenylindole, combined with microscopy image analysis. Our method allows simultaneous estimates of cellular respiration activity, membrane and nucleoid integrity, and allows the detection of photosynthetic pigments fluorescence along with morphological observations. The staining protocol has been adjusted for, both, laboratory and natural populations of the genus Phormidium (Oscillatoriales), and tested on 4 field-collected samples and 12 laboratory strains of cyanobacteria. Based on the mentioned cellular functions we suggest classification of cells in cyanobacterial populations into four categories: (i) active and intact; (ii) injured but active; (iii) metabolically inactive but intact; (iv) inactive and injured, or dead.
- MeSH
- barvení a značení metody MeSH
- časové faktory MeSH
- fluorescenční barviva metabolismus MeSH
- fluorescenční spektrometrie MeSH
- indoly metabolismus MeSH
- organické látky metabolismus MeSH
- sinice cytologie metabolismus MeSH
- tetrazoliové soli metabolismus MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
The well-developed biological soil crusts cover up to 40% of the soil surface in the alpine and subnival zones of the Tibetan Plateau, accounting for a vast area of Asia. We investigated the diversity and biomass of the phototrophic part (Cyanobacteria) of the microbial community inhabiting biological soil crusts and uncrusted soils in their surroundings on the elevation gradient of 5200-5900 m a.s.l. The influence of soil physico-chemical properties on phototrophs was studied. The ability of high-altitude phototrophs to fix molecular nitrogen was also determined under laboratory conditions. The biological soil crust phototroph community did not differ from that living in uncrusted soil in terms of the species composition, but the biomass is three-to-five times higher. An increasing trend in the cyanobacterial biomass from the biological soil crusts with elevation was observed, with the genera Nostoc spp., Microcoleus vaginatus and Phormidium spp. contributing to this increase. Based on the laboratory experiments, the highest nitrogenase activity was recorded in the middle elevations, and the rate of nitrogen fixation was not correlated with the cyanobacterial biomass.
- MeSH
- biodiverzita MeSH
- biomasa MeSH
- dusík metabolismus MeSH
- ekosystém * MeSH
- fixace dusíku MeSH
- nadmořská výška MeSH
- nitrogenasa metabolismus MeSH
- půda chemie MeSH
- půdní mikrobiologie * MeSH
- sinice klasifikace enzymologie fyziologie MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
Polarization microscopy has been used to study the internal structures of microbial cells and in terms of the birefringence of these structures and its possible relation to the cell function and composition. Cyanobacteria of the genus Phormidium were found to contain no anisotropic structures, while other microorganisms were found to contain them, albeit to a different extent, size, and number. The flagellate Euglena was found to contain two large anisotropic bodies, whereas the flagellate of the genus Phacus belonging to the same systematic group Euglenales was observed to contain only one large anisotropic body (storage substances--paramylon). On the other hand, green algae of the genus Scenedesmus, whose cells form four--celled coenobia, contained clusters of small anisotropic granules composed also of storage substances (volutin). Minute anisotropic granules (storage substances) in two smaller clusters were found also in diatoms of the genus Navicula, whereas the green alga of the genus Mougeotia was revealed to contain, in addition to minute anisotropic granules (storage substances) occurring in low numbers in the cytoplasm, also a strongly birefringent cell wall (shape birefringence). Cells of the amoeba of the genus Naegleria and heliozoans of the genus Heterophrys were observed to contain only isolated tiny anisotropic granules (storage substances).
Molecular and morphological methods were applied to study cyanobacterial community composition in biological soil crusts (BSCs) from four areas (two nunataks and two ridges) in the Sør Rondane Mountains, Antarctica. The sampling sites serve as control areas for open top chambers (OTCs) that were put in place in 2010 at the time of sample collection and will be compared with BSC samples taken from the OTCs in the future. Cyanobacterial cell biovolume was estimated using epifluorescence microscopy, which revealed the dominance of filamentous cyanobacteria in all studied sites except the Utsteinen ridge, where unicellular cyanobacteria were the most abundant. Cyanobacterial diversity was studied by a combination of molecular fingerprinting methods based on the 16S rRNA gene (denaturing gradient gel electrophoresis (DGGE) and 454 pyrosequencing) using cyanobacteria-specific primers. The number of DGGE sequences obtained per site was variable and, therefore, a high-throughput method was subsequently employed to improve the diversity coverage. Consistent with previous surveys in Antarctica, both methods showed that filamentous cyanobacteria, such as Leptolyngbya sp., Phormidium sp. and Microcoleus sp., were dominant in the studied sites. In addition, the studied localities differed in substrate type, climatic conditions and soil parameters, which probably resulted in differences in cyanobacterial community composition. Furthermore, the BSC growing on gneiss pebbles had lower cyanobacterial abundances than BSCs associated with granitic substrates.
- MeSH
- biodiverzita MeSH
- DNA bakterií genetika MeSH
- ekosystém MeSH
- ledový příkrov mikrobiologie MeSH
- molekulární typizace MeSH
- půdní mikrobiologie * MeSH
- RNA ribozomální 16S genetika MeSH
- sekvenční analýza DNA MeSH
- sinice * klasifikace genetika izolace a purifikace MeSH
- Publikační typ
- časopisecké články MeSH
- Geografické názvy
- Antarktida MeSH
Fourteen blue-green and green algae survived for widely different time periods ranging between 22-102 d in control culture medium. Irrespective of their long or short survival period in control cultures, their pro- or eukaryotic nature, their different morphological types or natural habitats, they all survived for a short time period ranging between 3-8 d in sewage water, 5-10 d in fertilizer factory effluent, (1/4)-2 d in brassica oil, (1/2)-2 d in phenol, 1-3 d in toluene, and 1-4 d in benzene (showing the relative toxicity of different chemicals to different algae, and the antialgal nature of brassica oil). Dilution decreased the toxicity of these agents very little, indicating that they all were very toxic to algae. None of the agent induced the formation of any reproductive or dormant cells. Sewage water, fertilizer factory effluent, brassica oil and/or benzene favored the formation of necridia cells in Phormidium bohneri, P. foveolarum, Microcoleus chthonoplastes, Lyngbya birgei, and L. major filaments. Scenedesmus quadricauda shed off all spines earlier, Hormidium flaccidum fragmented less or not at all, Scytonema millei formed no false branch and heterocyst, Aphanothece pallida and Gloeocapsa atrata cells did not divide, Cosmarium granatum cells did not form any zygospore and Oedogonium sp. not any oogonia-like cells under all or most of treatments with 25-100 % sewage water, 1-100 % fertilizer factory effluent, 1-100 % brassica oil, 25-100 % phenol, toluene and benzene.
- MeSH
- benzen farmakologie MeSH
- chemické látky znečišťující vodu farmakologie MeSH
- Chlorophyta fyziologie účinky léků MeSH
- fenol farmakologie MeSH
- odpadní vody analýza MeSH
- organické látky farmakologie MeSH
- průmyslový odpad analýza MeSH
- rozmnožování účinky léků MeSH
- spory fyziologie účinky léků MeSH
- toluen farmakologie MeSH
Cyanobacteria form extensive macroscopic mats in shallow freshwater environments in the High Arctic and Antarctic. In these habitats, the communities are exposed to seasonal freezing and desiccation as well as to freeze-thawing and drying-rewetting cycles. Here, we characterized the annual cycles of two Phormidium communities in very shallow seepages located in central Svalbard. We observed the structure of the communities and the morphology, ultrastructure, metabolic activity, and viability of filaments and single cells. The communities overwintered as frozen mats, which were formed by long filaments enclosed in thick multilayered polysaccharide sheaths. No morphologically and/or ultrastructurally distinct spore-like cells were produced for surviving the winter, and the winter survival of the communities was not provided by a few resistant cells, which did not undergo visible morphological and ultrastructural transformations. Instead, a high proportion of cells in samples (85%) remained viable after prolonged freezing. The sheaths were the only morphological adaption, which seemed to protect the trichomes from damage due to freezing and freeze-associated dehydration. The cells in the overwintering communities were not dormant, as all viable cells rapidly resumed respiration after thawing, and their nucleoids were not condensed. During the whole vegetative season, defined by the presence of water in a liquid state, the communities were constantly metabolically active and contained <1% of dead and injured cells. The morphology and ultrastructure of the cells remained unaltered during observations throughout the year, except for light-induced changes in thylakoids. The dissemination events are likely to occur in spring as most of the trichomes were split into short fragments (hormogonia), a substantial proportion of which were released into the environment by gliding out of their sheaths, as well as by cracking and dissolving their sheaths. The short fragments subsequently grew longer and gradually produced new polysaccharide sheaths.
- MeSH
- ekosystém * MeSH
- mikrobiální viabilita MeSH
- mikrobiologie vody MeSH
- roční období MeSH
- sinice růst a vývoj metabolismus fyziologie ultrastruktura MeSH
- sladká voda chemie mikrobiologie MeSH
- teplota MeSH
- zmrazování MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Geografické názvy
- Antarktida MeSH
- Arktida MeSH
- Svalbard MeSH
Although phototrophic microbial communities are important components of soils in arid and semi-arid ecosystems around the world, the knowledge of their taxonomic composition and dependency on soil chemistry and vegetation is still fragmentary. We studied the abundance and the diversity of cyanobacteria and eukaryotic microalgae along altitudinal gradients (3,700-5,970 m) at four sites in the dry mountains of Ladakh (Little Tibet, Zanskar Mountains, and Eastern Karakoram), using epifluorescence. The effects of environmental factors (altitude, mountain range, and vegetation type) on soil physico-chemical parameters (pH; texture; organic matter, nitrogen, ammonia, and phosphorus contents; and concentration of chlorophylls and carotenoids) and on the composition and biovolume of phototrophs were tested by multivariate redundancy analysis and variance partitioning. Phototrophs were identified in all collected samples, and phototroph biovolume ranged from 0.08 to 0.32 mm(3) g(-1) dry weight. The dominant component was cyanobacteria, which represented 70.9% to 98.6% of the biovolume. Cyanobacterial species richness was low in that only 28 morphotypes were detected. The biovolume of Oscillatoriales consisted mainly of Phormidium spp. and Microcoleus vaginatus. The environmental factors accounted for 43.8% of the total variability in microbial and soil data, 20.6% of which was explained solely by mountain range, 7.0% by altitude, and 8.4% by vegetation type. Oscillatoriales prevailed in alpine meadows (which had relatively high organic matter and fine soil texture), while Nostocales dominated in the subnival zone and screes. Eukaryotic microalgae together with cyanobacteria in the order Chroococcales were mostly present in the subnival zone. We conclude that the high elevation, semiarid, and arid soils in Ladakh are suitable habitats for microbial phototrophic communities and that the differences in these communities are associated with site, altitude, and vegetation type.
- MeSH
- chlorofyl analýza MeSH
- fluorescenční mikroskopie metody MeSH
- fototrofní procesy MeSH
- mikrořasy růst a vývoj MeSH
- multivariační analýza MeSH
- nadmořská výška MeSH
- půda chemie MeSH
- půdní mikrobiologie MeSH
- sinice růst a vývoj MeSH
- společenstvo MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Geografické názvy
- Tibet MeSH
Pithophora oedogonia and Cladophora glomerata survived lowest 60 and 58%, respectively, in June when the pond diurnal water temperature (PDWT) increased to a maximum of 28 degrees C. The lowering of PDWT only by 1 degrees C in July improved survivability of both algae to their almost maximum level of 100 and 96%, respectively. Further lowering of PDWT to 17-22 degrees C in November initiated akinete formation in P. oedogonia. The process of akinete initiation, maturation and germination continued till April when PDWT increased to 20-24 degrees C, but not beyond that in May when PDWT was 21-26 degrees C. By this time, probably all akinetes have germinated in situ, and the alga was entirely vegetative. P. oedogonia population is not synchronous in nature, since during the 5-6-month reproductive season, some filaments were in active vegetative stage, some had akinete initiation, some had completed akinete formation, and some had akinetes germinating. C. glomerata grew dense vegetative in November and initiated (zoo)sporangial primordia formation (to some extent) in February (when PDWT was lowest, viz. 10-14 degrees C) till April. Meanwhile, no (zoo)-sporangial primordia either produced any zoospore or germinated into a germ tube; and all released their cytoplasmic content and died (along with some vegetative cells) with an increase in PDWT to 21-26 degrees C in May. Vaucheria geminata vegetative patches appeared on the soil surface, 2nd week of January by lowering of atmospheric diurnal temperature (ADT) to 9-16 degrees C in the 1st week. The alga started sexual reproduction by the 2nd week of March (when ADT increased to 20-23 degrees C) and completed the process of reproduction by the 1st week of April (when ADT increased to 24-26 degrees C) and died thereafter. P. oedogonia, C. glomerata and V. geminata survived better and longer in submerged conditions than air-exposed (which was true for P. oedogonia and C. glomerata aquatic habitat and also indicated that the soil alga V. geminata could survive to some extent if submerged in rain water). P. oedogonia formed akinetes and C. glomerata (zoo)sporangial primordia only in submerged condition and not when air-exposed on moist soil surface. V. geminata did not complete the life cycle both under submerged and air-exposed conditions. Vegetative survival in P. oedogonia, C. glomerata, V. geminata, Aphanothece pallida, Gloeocapsa atrata, Scytonema millei, Myxosarcina burmensis, Phormidium bohneri, Oscillatoria animalis, O. subbrevis, Lyngbya birgei, L. major, Microcoleus chthonoplastes and Rhizoclonium crassipellitum, reproduction in P. oedogonia, C. glomerata and V. geminata, cell division in A. pallida and G. atrata, heterocyst and false branch formation in S. millei, all, were adversely affected at approximately 28.5 degrees C for t12 h at light intensity of approximately 160 micromol m(-2) s(-1); high intensity does not ameliorate high temperature damage to any algae. The presence of liquid water, than its absence, outside the different algae moderated the severity of heat to some extent but not when the heat was severe.
