Yeast colonies: a model for studies of aging, environmental adaptation, and longevity
Language English Country United States Media print-electronic
Document type Journal Article, Research Support, Non-U.S. Gov't, Review
PubMed
22928081
PubMed Central
PMC3425895
DOI
10.1155/2012/601836
Knihovny.cz E-resources
- MeSH
- Models, Biological * MeSH
- Time Factors MeSH
- Longevity physiology MeSH
- Adaptation, Physiological * MeSH
- Yeasts cytology growth & development metabolism physiology MeSH
- Humans MeSH
- Colony Count, Microbial MeSH
- Environment * MeSH
- Animals MeSH
- Check Tag
- Humans MeSH
- Animals MeSH
- Publication type
- Journal Article MeSH
- Research Support, Non-U.S. Gov't MeSH
- Review MeSH
When growing on solid surfaces, yeast, like other microorganisms, develops organized multicellular populations (colonies and biofilms) that are composed of differentiated cells with specialized functions. Life within these populations is a prevalent form of microbial existence in natural settings that provides the cells with capabilities to effectively defend against environmental attacks as well as efficiently adapt and survive long periods of starvation and other stresses. Under such circumstances, the fate of an individual yeast cell is subordinated to the profit of the whole population. In the past decade, yeast colonies, with their complicated structure and high complexity that are also developed under laboratory conditions, have become an excellent model for studies of various basic cellular processes such as cell interaction, signaling, and differentiation. In this paper, we summarize current knowledge on the processes related to chronological aging, adaptation, and longevity of a colony cell population and of its differentiated cell constituents. These processes contribute to the colony ability to survive long periods of starvation and mostly differ from the survival strategies of individual yeast cells.
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Kaeberlein M. Lessons on longevity from budding yeast. Nature. 2010;464(7288):513–519. PubMed PMC
Fabrizio P, Liou LL, Moy VN, et al. SOD2 functions downstream of Sch9 to extend longevity in yeast. Genetics. 2003;163(1):35–46. PubMed PMC
Fabrizio P, Pozza F, Pletcher SD, Gendron CM, Longo VD. Regulation of longevity and stress resistance by Sch9 in yeast. Science. 2001;292(5515):288–290. PubMed
Powers RW, III, Kaeberlein M, Caldwell SD, Kennedy BK, Fields S. Extension of chronological life span in yeast by decreased TOR pathway signaling. Genes and Development. 2006;20(2):174–184. PubMed PMC
Wei M, Fabrizio P, Madia F, et al. Tor1/Sch9-regulated carbon source substitution is as effective as calorie restriction in life span extension. PLoS Genetics. 2009;5(5)e1000467 PubMed PMC
Burtner CR, Murakami CJ, Kennedy BK, Kaeberlein M. A molecular mechanism of chronological aging in yeast. Cell Cycle. 2009;8(8):1256–1270. PubMed PMC
McCormick MA, Tsai SY, Kennedy BK. TOR and ageing: a complex pathway for a complex process. Philosophical Transactions of the Royal Society B. 2011;366(1561):17–27. PubMed PMC
Leontieva OV, Blagosklonny MV. Yeast-like chronological senescence in mammalian cells: phenomenon, mechanism and pharmacological suppression. Aging. 2011;3(11):1078–1091. PubMed PMC
Matecic M, Smith DL, Pan X, et al. A microarray-based genetic screen for yeast chronological aging factors. PLoS Genetics. 2010;6(4)e1000921 PubMed PMC
Cap M, Stepanek L, Harant K, Vachova L, Palkova Z. Cell differentiation within a yeast colony: metabolic and regulatory parallels with a tumor-affected organism. Molecular Cell. 2012;46(4):436–448. PubMed
Klosinska MM, Crutchfield CA, Bradley PH, Rabinowitz JD, Broach JR. Yeast cells can access distinct quiescent states. Genes and Development. 2011;25(4):336–349. PubMed PMC
Wu J, Zhang N, Hayes A, Panoutsopoulo K, Oliver SG. Global analysis of nutrient control of gene expression in Saccharomyces cerevisiae during growth and starvation. Proceedings of the National Academy of Sciences of the United States of America. 2004;101(9):3148–3153. PubMed PMC
Boender LG, Almering MJ, Dijk M, et al. Extreme calorie restriction and energy source starvation in Saccharomyces cerevisiae represent distinct physiological states. Biochimica et Biophysica Acta. 2011;1813(12):2133–2144. PubMed
Boender LG, van Maris AJ, de Hulster EA, et al. Cellular responses of Saccharomyces cerevisiae at near-zero growth rates: transcriptome analysis of anaerobic retentostat cultures. FEMS Yeast Research. 2011;11(8):603–620. PubMed PMC
Laporte D, Lebaudy A, Sahin A, et al. Metabolic status rather than cell cycle signals control quiescence entry and exit. The Journal of Cell Biology. 2011;192(6):949–957. PubMed PMC
Vachova L, Stovicek V, Hlavacek O, et al. Flo11p, drug efflux pumps, and the extracellular matrix cooperate to form biofilm yeast colonies. The Journal of Cell Biology. 2011;194(5):679–687. PubMed PMC
Meunier JR, Choder M. Saccharomyces cerevisiae colony growth and ageing: biphasic growth accompanied by changes in gene expression. Yeast. 1999;15(12):1159–1169. PubMed
Váchová L, Palková Z. Physiological regulation of yeast cell death in multicellular colonies is triggered by ammonia. The Journal of Cell Biology. 2005;169(5):711–717. PubMed PMC
Palkova Z, Vachova L, Gaskova D, Kucerova H. Synchronous plasma membrane electrochemical potential oscillations during yeast colony development and aging. Molecular Membrane Biology. 2009;26(4):228–235. PubMed
Fabrizio P, Battistella L, Vardavas R, et al. Superoxide is a mediator of an altruistic aging program in Saccharomyces cerevisiae . The Journal of Cell Biology. 2004;166(7):1055–1067. PubMed PMC
Fabrizio P, Hoon S, Shamalnasab M, et al. Genome-wide screen in Saccharomyces cerevisiae identifies vacuolar protein sorting, autophagy, biosynthetic, and tRNA methylation genes involved in life span regulation. PLoS Genetics. 2010;6(7)e1001024 PubMed PMC
Li L, Lu Y, Qin LX, Bar-Joseph Z, Werner-Washburne M, Breeden LL. Budding yeast SSD1-V regulates transcript levels of many longevity genes and extends chronological life span in purified quiescent cells. Molecular Biology of the Cell. 2009;20(17):3851–3864. PubMed PMC
MacLean M, Harris N, Piper PW. Chronological lifespan of stationary phase yeast cells; a model for investigating the factors that might influence the ageing of postmitotic tissues in higher organisms. Yeast. 2001;18(6):499–509. PubMed
Piper PW, Harris NL, MacLean M. Preadaptation to efficient respiratory maintenance is essential both for maximal longevity and the retention of replicative potential in chronologically ageing yeast. Mechanisms of Ageing and Development. 2006;127(9):733–740. PubMed
Oliver JD. The viable but nonculturable state in bacteria. Journal of Microbiology. 2005;43(1):93–100. PubMed
Palková Z, Devaux F, Řičicová M, Mináriková L, Le Crom S, Jacq C. Ammonia pulses and metabolic oscillations guide yeast colony development. Molecular Biology of the Cell. 2002;13(11):3901–3914. PubMed PMC
Palková Z, Forstová J. Yeast colonies synchronise their growth and development. Journal of Cell Science. 2000;113(11):1923–1928. PubMed
Palkova Z, Janderova B, Gabriel J, Zikanova B, Pospisek M, Forstova J. Ammonia mediates communication between yeast colonies. Nature. 1997;390(6659):532–536. PubMed
Palkova Z, Vachova L. Ammonia signaling in yeast colony formation. International Review of Cytology. 2003;225:229–272. PubMed
Vachova L, Kucerova H, Devaux F, Ulehlova M, Palkova Z. Metabolic diversification of cells during the development of yeast colonies. Environmental Microbiology. 2009;11(2):494–504. PubMed
Gralla EB, Valentine JS. Null mutants of Saccharomyces cerevisiae Cu, Zn superoxide dismutase: characterization and spontaneous mutation rates. Journal of Bacteriology. 1991;173(18):5918–5920. PubMed PMC
Longo VD, Gralla EB, Valentine JS. Superoxide dismutase activity is essential for stationary phase survival in Saccharomyces cerevisiae. Mitochondrial production of toxic oxygen species in vivo . The Journal of Biological Chemistry. 1996;271(21):12275–12280. PubMed
Čáp M, Váchová L, Palková Z. Yeast colony survival depends on metabolic adaptation and cell differentiation rather than on stress defense. The Journal of Biological Chemistry. 2009;284(47):32572–32581. PubMed PMC
Váchová L, Devaux F, Kučerová H, Řičicová M, Jacq C, Palková Z. Sok2p transcription factor is involved in adaptive program relevant for long term survival of Saccharomyces cerevisiae colonies. The Journal of Biological Chemistry. 2004;279(36):37973–37981. PubMed
Váchová L, Chernyavskiy O, Strachotová D, et al. Architecture of developing multicellular yeast colony: spatio-temporal expression of Ato1p ammonium exporter. Environmental Microbiology. 2009;11(7):1866–1877. PubMed
Büttner S, Eisenberg T, Herker E, Carmona-Gutierrez D, Kroemer G, Madeo F. Why yeast cells can undergo apoptosis: death in times of peace, love, and war. The Journal of Cell Biology. 2006;175(4):521–525. PubMed PMC
Carmona-Gutierrez D, Eisenberg T, Büttner S, Meisinger C, Kroemer G, Madeo F. Apoptosis in yeast: triggers, pathways, subroutines. Cell Death and Differentiation. 2010;17(5):763–773. PubMed
Allen C, Büttner S, Aragon AD, et al. Isolation of quiescent and nonquiescent cells from yeast stationary-phase cultures. The Journal of Cell Biology. 2006;174(1):89–100. PubMed PMC
Aragon AD, Rodriguez AL, Meirelles O, et al. Characterization of differentiated quiescent and nonquiescent cells in yeast stationary-phase cultures. Molecular Biology of the Cell. 2008;19(3):1271–1280. PubMed PMC
Smets B, Ghillebert R, De Snijder P, et al. Life in the midst of scarcity: adaptations to nutrient availability in Saccharomyces cerevisiae . Current Genetics. 2010;56(1):1–32. PubMed
Hinnebusch AG. Translational regulation of GCN4 and the general amino acid control of yeast. Annual Review of Microbiology. 2005;59:407–450. PubMed
Davidson GS, Joe RM, Roy S, et al. The proteomics of quiescent and nonquiescent cell differentiation in yeast stationary-phase cultures. Molecular Biology of the Cell. 2011;22(7):988–998. PubMed PMC
Cap M, Vachova L, Palkova Z. How to survive within a yeast colony?: change metabolism or cope with stress? Communicative & Integrative Biology. 2010;3(2):198–200. PubMed PMC
Piccirillo S, White MG, Murphy JC, Law DJ, Honigberg SM. The Rim101p/PacC pathway and alkaline pH regulate pattern formation in yeast colonies. Genetics. 2010;184(3):707–716. PubMed PMC
Engelberg D, Mimran A, Martinetto H, et al. Multicellular stalk-like structures in Saccharomyces cerevisiae . Journal of Bacteriology. 1998;180(15):3992–3996. PubMed PMC
Scherz R, Shinder V, Engelberg D. Anatomical analysis of Saccharomyces cerevisiae stalk-like structures reveals spatial organization and cell specialization. Journal of Bacteriology. 2001;183(18):5402–5413. PubMed PMC
Št’ovíček V, Váchová L, Kuthan M, Palková Z. General factors important for the formation of structured biofilm-like yeast colonies. Fungal Genetics and Biology. 2010;47(12):1012–1022. PubMed
Decho AW. Microbial biofilms in intertidal systems: an overview. Continental Shelf Research. 2000;20(10-11):1257–1273.
Nett JE, Sanchez H, Cain MT, Andes DR. Genetic basis of Candida Biofilm resistance due to drug-sequestering matrix glucan. Journal of Infectious Diseases. 2010;202(1):171–175. PubMed PMC
Joubert LM, Wolfaardt GM, Botha A. Microbial exopolymers link predator and prey in a model yeast biofilm system. Microbial Ecology. 2006;52(2):187–197. PubMed
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