The mitochondrion-like organelle of Trimastix pyriformis contains the complete glycine cleavage system

. 2013 ; 8 (3) : e55417. [epub] 20130313

Jazyk angličtina Země Spojené státy americké Médium print-electronic

Typ dokumentu časopisecké články, práce podpořená grantem

Perzistentní odkaz   https://www.medvik.cz/link/pmid23516392

All eukaryotic organisms contain mitochondria or organelles that evolved from the same endosymbiotic event like classical mitochondria. Organisms inhabiting low oxygen environments often contain mitochondrial derivates known as hydrogenosomes, mitosomes or neutrally as mitochondrion-like organelles. The detailed investigation has shown unexpected evolutionary plasticity in the biochemistry and protein composition of these organelles in various protists. We investigated the mitochondrion-like organelle in Trimastix pyriformis, a free-living member of one of the three lineages of anaerobic group Metamonada. Using 454 sequencing we have obtained 7 037 contigs from its transcriptome and on the basis of sequence homology and presence of N-terminal extensions we have selected contigs coding for proteins that putatively function in the organelle. Together with the results of a previous transcriptome survey, the list now consists of 23 proteins - mostly enzymes involved in amino acid metabolism, transporters and maturases of proteins and transporters of metabolites. We have no evidence of the production of ATP in the mitochondrion-like organelle of Trimastix but we have obtained experimental evidence for the presence of enzymes of the glycine cleavage system (GCS), which is part of amino acid metabolism. Using homologous antibody we have shown that H-protein of GCS localizes into vesicles in the cell of Trimastix. When overexpressed in yeast, H- and P-protein of GCS and cpn60 were transported into mitochondrion. In case of H-protein we have demonstrated that the first 16 amino acids are necessary for this transport. Glycine cleavage system is at the moment the only experimentally localized pathway in the mitochondrial derivate of Trimastix pyriformis.

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Hjort K, Goldberg AV, Tsaousis AD, Hirt RP, Embley TM (2010) Diversity and reductive evolution of mitochondria among microbial eukaryotes. Philos Trans R Soc Lond B Biol Sci 365: 713–27. PubMed PMC

Shiflett AM, Johnson PJ (2010) Mitochondrion-related organelles in eukaryotic protists. Annu Rev Microbiol 64: 409–29. PubMed PMC

Müller M, Mentel M, van Hellemond JJ, Henze K, Woehle C, et al. (2012) Biochemistry and evolution of anaerobic energy metabolism in eukaryotes. Microbiol Mol Biol Rev 76: 444–95. PubMed PMC

Boxma B, de Graaf RM, van der Staay GW, van Alen TA, Ricard G, et al. (2005) An anaerobic mitochondrion that produces hydrogen. Nature 434: 74–9. PubMed

Stechmann A, Hamblin K, Pérez-Brocal V, Gaston D, Richmond GS, et al. (2008) Organelles in Blastocystis that blur the distinction between mitochondria and hydrogenosomes. Curr Biol 18: 580–5. PubMed PMC

Pérez-Brocal V, Clark CG (2008) Analysis of two genomes from the mitochondrion-like organelle of the intestinal parasite Blastocystis: complete sequences, gene content, and genome organization. Mol Biol Evol 25: 2475–82. PubMed PMC

Denoeud F, Roussel M, Noel B, Wawrzyniak I, Da Silva C, et al. (2011) Genome sequence of the stramenopile Blastocystis, a human anaerobic parasite. Genome Biol 12: R29. PubMed PMC

Jedelský PL, Doležal P, Rada P, Pyrih J, Smíd O, et al. (2011) The minimal proteome in the reduced mitochondrion of the parasitic protist Giardia intestinalis . PLoS One 6: e17285. PubMed PMC

Schneider RE, Brown MT, Shiflett AM, Dyall SD, Hayes RD, et al. (2011) The Trichomonas vaginalis hydrogenosome proteome is highly reduced relative to mitochondria, yet complex compared with mitosomes. Int J Parasitol 41: 1421–34. PubMed PMC

Hug LA, Stechmann A, Roger AJ (2010) Phylogenetic distributions and histories of proteins involved in anaerobic pyruvate metabolism in eukaryotes. Mol Biol Evol 27: 311–324. PubMed

Stairs CW, Roger AJ, Hampl V (2011) Eukaryotic pyruvate formate lyase and its activating enzyme were acquired laterally from a Firmicute. Mol Biol Evol 28: 2087–99. PubMed

Hampl V, Stairs CW, Roger AJ (2011) The tangled past of eukaryotic enzymes involved in anaerobic metabolism. Mob Genet Elements 1: 71–74. PubMed PMC

Katinka MD, Duprat S, Cornillot E, Metenier G, Thomarat F, et al. (2001) Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi . Nature 414: 450–453. PubMed

Goldberg AV, Molik S, Tsaousis AD, Neumann K, Kuhnke G, et al. (2008) Localization and functionality of microsporidian iron-sulphur cluster assembly proteins. Nature 452: 624–628. PubMed

Mogi T, Kita K (2012) Diversity in mitochondrial metabolic pathways in parasitic protists Plasmodium and Cryptosporidium . Parasitol Int 59: 305–12. PubMed

Dolezal P, Dagley MJ, Kono M, Wolynec P, Likić VA, et al. (2010) The essentials of protein import in the degenerate mitochondrion of Entamoeba histolytica . PLoS Pathogen 6: e1000812. PubMed PMC

Mi-ichi F, Makiuchi T, Furukawa A, Sato D, Nozaki T (2011) Sulfate activation in mitosomes plays an important role in the proliferation of Entamoeba histolytica . PLoS Negl Trop Dis 5: e1263. PubMed PMC

Lill R, Kispal G (2000) Maturation of cellular Fe-S proteins: an essential fiction of mitochondria. Trends Biochem Sci 2000 25: 352–6. PubMed

Cavalier-Smith T (2003) The excavate protozoan phyla Metamonada Grassé emend. (Anaeromonadea, Parabasalia, Carpediemonas, Eopharyngia) and Loukozoa emend. (Jakobea, Malawimonas): their evolutionary affinities and new higher taxa. Int J Syst Evol Microbiol 53: 1741–58. PubMed

Hampl V, Hug L, Leigh JW, Dacks JB, Lang BF, et al. (2009) Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups". Proc Natl Acad Sci U S A 106: 3859–64. PubMed PMC

Rada P, Doležal P, Jedelský PL, Bursac D, Perry AJ, et al. (2011) The core components of organelle biogenesis and membrane transport in the hydrogenosomes of Trichomonas vaginalis . PLoS One 6: e24428. PubMed PMC

Hrdy I, Tachezy J, Müller M (2008) Metabolism of trichomonad hydrogenosomes. In: Tachezy J, editor. Hydrogenosomes and Mitosomes:Mitochondria of Anaerobic Euakryotes.Berlin, Heidelberg: Springer-Verlag.pp. 114–145.

Tovar J, León-Avila G, Sánchez LB, Sutak R, Tachezy J, et al. (2003) Mitochondrial remnant organelles of Giardia function in iron-sulphur protein maturation. Nature 426: 172–6. PubMed

Simpson AG (2003) Cytoskeletal organization, phylogenetic affinities and systematic in the contentious taxon Excavata (Eukaryota). Int J Syst Evol Microbiol 53: 1759–77. PubMed

Carpenter KJ, Waller RF, Keeling PJ (2008) Surface morphology of Saccinobaculus (Oxymonadida): implications for character evolution and function in oxymonads. Protist 159: 209–21. PubMed

Brugerolle G, Patterson D (1997) Ultrastructure of Trimastix convexa Hollande, an amitochondriate anaerobic flagellate with a previously undescribed organization. Europ J Protistol 33: 121–130.

O'Kelly CJ, Farmer MA, Nerad TA (1999) Ultrastructure of Trimastix pyriformis (Klebs) Bernard et al.: similarities of Trimastix species with retortamonad and jakobid flagellates. Protist 150: 149–162. PubMed

Simpson AGB, Bernard C, Patterson DJ (2000) The ultrastructure of Trimastix marina Kent, 1880 (eukaryota), an excavate flagellate. Europ J Protistol 36: 229–251.

Hampl V, Silberman JD, Stechmann A, Diaz-Triviño S, Johnson PJ, et al. (2008) Genetic evidence for a mitochondriate ancestry in the 'amitochondriate' flagellate Trimastix pyriformis . PLoS One 3: e1383. PubMed PMC

Chou KC, Shen HB (2010) A new method for predicting the subcellular localization of eukaryotic proteins with both single and multiple sites: Euk-mPLoc 2.0. PLoS One 5: e9931. PubMed PMC

Kunji ER, Robinson AJ (2006) The conserved substrate binding site of mitochondrial carriers. Biochim Biophys Acta 1757: 1237–48. PubMed

Fujiwara K, Okamura-Ikeda K, Packer L, Motokawa Y (1997) Synthesis and Characterization of Selenolipoylated H-protein of the Glycine Cleavage System J Biol Chem. 272: 19880–19883. PubMed

Douce R, Bourguignon J, Neuburger M, Rebeille F (2001) The glycine decarboxylase system: a fascinating complex. Trends Plant Sci 6: 167–176. PubMed

Besson V, Nauburger M, Rebeille F, Douce R (1995) Evidence for three serine hydroxymethyltransferases in green leaf cells. Purification and characterization of the mitochondrial and chloroplastic isoforms". Plant Physiol Biochem 33: 665–673.

Gelius-Dietrich G, Ter Braak M, Henze K (2007) Mitochondrial steps of arginine biosynthesis are conserved in the hydrogenosomes of the chytridiomycete Neocallimastix frontalis . J Eukaryot Microbiol 54: 42–4. PubMed

Touz MC, Rópolo AS, Rivero MR, Vranych CV, Conrad JT (2008) Arginine deiminase has multiple regulatory roles in the biology of Giardia lamblia . J Cell Sci 121: 2930–8. PubMed PMC

Morada M, Smid O, Hampl V, Sutak R, Lam B, et al. (2011) Hydrogenosome-localization of arginine deiminase in Trichomonas vaginalis . Mol Biochem Parasitol 176: 51–4. PubMed PMC

Stechmann A, Baumgartner M, Silberman JD, Roger AJ (2006) The glycolytic pathway of Trimastix pyriformis is an evolutionary mosaic. BMC Evol Biol 6: 101. PubMed PMC

Meyer J (2007) [FeFe] hydrogenases and their evolution: a genomic perspective. Cell Mol Life Sci 64: 1063–1084. PubMed PMC

Posewitz MC, King PW, Smolinski SL, Zhang L, Seibert M, et al. (2004) Discovery of two novel radical S-adenosylmethionine proteins required for the assembly of an active [Fe] hydrogenase. J Biol Chem 279: 25711–25720. PubMed

Putz S, Doležal P, Gelius-Dietrich G, Boháčová L, Tachezy J, et al. (2006) Fe-hydrogenase maturases in the hydrogenosomes of Trichomonas vaginalis . Eukaryot Cell 5: 579–586. PubMed PMC

Clark CG, Roger AJ (1995) Direct evidence for secondary loss of mitochondria in Entamoeba histolytica . Proc Natl Acad Sci U S A 92: 6518–21. PubMed PMC

Yousuf MA, Mi-ichi F, Nakada-Tsukui K, Nozaki T (2010) Localization and targeting of an unusual pyridine nucleotide transhydrogenase in Entamoeba histolytica . Eukaryot Cell 9: 926–33. PubMed PMC

Olausson T, Fjellstrom O, Meuller J, Rydstrom J (1995) Molecular biology of nicotinamide nucleotide transhydrogenase–a unique proton pump. Biochim Biophys Acta 1231: 1–19. PubMed

Palmieri L, Rottensteiner H, Girzalsky W, Scarcia P, Palmieri F, et al. (2001) Identification and functional reconstitution of the yeast peroxisomal adenine nucleotide transporter. EMBO J 20: 5049–5059. PubMed PMC

Bedhomme M, Hoffmann M, McCarthy EA, Gambonnet B, Moran RG, et al. (2005) Folate metabolism in plants: an Arabidopsis homolog of the mammalian mitochondrial folate transporter mediates folate import into chloroplasts. J Biol Chem 280: 34823–34831. PubMed

Satre M, Mattei S, Aubry L, Gaudet P, Pelosi L, et al. (2007) Mitochondrial carrier family: Repertoire and peculiarities of the cellular slime mould Dictyostelium discoideum . Biochimie 89: 1058–1069. PubMed

Dolezal P, Dagley MJ, Kono M, Wolynec P, Likić VA, et al. (2010) The essentials of protein import in the degenerate mitochondrion of Entamoeba histolytica . PLoS Pathog 6: e1000812. PubMed PMC

Emanuelsson O, Brunak S, von Heijne G, Nielsen H (2007) Locating proteins in the cell using TargetP, SignalP and related tools. Nat Protoc 2: 953–971. PubMed

Krogh A, Larsson B, von Heijne G, Sonnhammer EL (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 305: 567–80. PubMed

Söding J, Biegert A, Lupas AN (2005) The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res. 33(Web Server issue):W244–8. PubMed PMC

Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41: 95–98.

Gietz RD, Schiestl RH, Willems AR, Woods RA (1995) Studies on the transformation of intact yeast cells by the LiAc/SS-DNA/PEG procedure. Yeast 11: 355–60. PubMed

Drmota T, Proost P, Van Ranst M, Weyda F, Kulda J, et al. (1996) Iron-ascorbate cleavable malic enzyme from hydrogenosomes of Trichomonas vaginalis: purification and characterization. Mol Biochem Parasitol 83: 221–34. PubMed

Dawson SC, Pham JK, House SA, Slawson EE, Cronembold D, et al. (2008) Stable transformation of an episomal protein-tagging shuttle vector in the piscine diplomonad Spironucleus vortens . BMC Microbiol 8: 71. PubMed PMC

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