Interactions between nucleic acids and proteins are some of the most important interactions in biology because they are the cornerstones for fundamental biological processes, such as replication, transcription, and recombination [...].

Institute of Biophysics of the Czech Academy of Sciences Královopolská 135 612 00 Brno Czech Republic

School of Biological Sciences University of East Anglia Norwich Research Park Norwich NR4 7TJ UK

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Cozzolino F., Iacobucci I., Monaco V., Monti M. Protein–DNA/RNA Interactions: An Overview of Investigation Methods in the Omics Era. J. Proteome Res. 2021;20:3018–3030. doi: 10.1021/acs.jproteome.1c00074. PubMed DOI PMC

Corley M., Burns M.C., Yeo G.W. How RNA-Binding Proteins Interact with RNA: Molecules and Mechanisms. Mol. Cell. 2020;78:9–29. doi: 10.1016/j.molcel.2020.03.011. PubMed DOI PMC

Brazda V., Fojta M., Bowater R.P. Structures and stability of simple DNA repeats from bacteria. Biochem. J. 2020;477:325–339. doi: 10.1042/BCJ20190703. PubMed DOI PMC

Wang G., Vasquez K.M. Dynamic alternative DNA structures in biology and disease. Nat. Rev. Genet. 2022:1–24. doi: 10.1038/s41576-022-00539-9. PubMed DOI PMC

Bansal A., Kaushik S., Kukreti S. Non-canonical DNA structures: Diversity and disease association. Front. Genet. 2022;13:959258. doi: 10.3389/fgene.2022.959258. PubMed DOI PMC

Bartas M., Červeň J., Guziurová S., Slychko K., Pečinka P. Amino Acid Composition in Various Types of Nucleic Acid-Binding Proteins. Int. J. Mol. Sci. 2021;22:922. doi: 10.3390/ijms22020922. PubMed DOI PMC

Zhuravlev A.V., Zakharov G.A., Anufrieva E.V., Medvedeva A.V., Nikitina E.A., Savvateeva-Popova E.V. Chromatin Structure and “DNA Sequence View”: The Role of Satellite DNA in Ectopic Pairing of the Drosophila X Polytene Chromosome. Int. J. Mol. Sci. 2021;22:8713. doi: 10.3390/ijms22168713. PubMed DOI PMC

Choi S., Lee G., Kim J. Cellular Computational Logic Using Toehold Switches. Int. J. Mol. Sci. 2022;23:4265. doi: 10.3390/ijms23084265. PubMed DOI PMC

Víglaský V. Hidden Information Revealed Using the Orthogonal System of Nucleic Acids. Int. J. Mol. Sci. 2022;23:1804. doi: 10.3390/ijms23031804. PubMed DOI PMC

Zhao X., Usdin K. (Dys) function Follows Form: Nucleic Acid Structure, Repeat Expansion, and Disease Pathology in FMR1 Disorders. Int. J. Mol. Sci. 2021;22:9167. doi: 10.3390/ijms22179167. PubMed DOI PMC

Bartas M., Slychko K., Brázda V., Červeň J., Beaudoin C.A., Blundell T.L., Pečinka P. Searching for New Z-DNA/Z-RNA Binding Proteins Based on Structural Similarity to Experimentally Validated Zα Domain. Int. J. Mol. Sci. 2022;23:768. PubMed PMC

Bowater R.P., Bohálová N., Brázda V. Interaction of Proteins with Inverted Repeats and Cruciform Structures in Nucleic Acids. Int. J. Mol. Sci. 2022;23:6171. doi: 10.3390/ijms23116171. PubMed DOI PMC

Bezzi G., Piga E.J., Binolfi A., Armas P. CNBP Binds and Unfolds In Vitro G-Quadruplexes Formed in the SARS-CoV-2 Positive and Negative Genome Strands. Int. J. Mol. Sci. 2021;22:2614. doi: 10.3390/ijms22052614. PubMed DOI PMC

Bohálová N., Cantara A., Bartas M., Kaura P., Šťastný J., Pečinka P., Brázda V. Tracing dsDNA Virus–Host Coevolution through Correlation of Their G-Quadruplex-Forming Sequences. Int. J. Mol. Sci. 2021;22:3433. doi: 10.3390/ijms22073433. PubMed DOI PMC

Trizna L., Janovec L., Halaganová A., Víglaský V. Rhodamine 6G-Ligand Influencing G-Quadruplex Stability and Topology. Int. J. Mol. Sci. 2021;22:7639. doi: 10.3390/ijms22147639. PubMed DOI PMC

Volná A., Bartas M., Karlický V., Nezval J., Kundrátová K., Pečinka P., Červeň J. G-Quadruplex in Gene Encoding Large Subunit of Plant RNA Polymerase II: A Billion-Year-Old Story. Int. J. Mol. Sci. 2021;22:7381. doi: 10.3390/ijms22147381. PubMed DOI PMC

Bartas M., Brázda V., Volná A., Červeň J., Pečinka P., Zawacka-Pankau J.E. The Changes in the p53 Protein across the Animal Kingdom Point to Its Involvement in Longevity. Int. J. Mol. Sci. 2021;22:8512. doi: 10.3390/ijms22168512. PubMed DOI PMC

Brázda V., Bartas M., Bowater R.P. Evolution of Diverse Strategies for Promoter Regulation. Trends Genet. 2021;37:730–744. doi: 10.1016/j.tig.2021.04.003. PubMed DOI

Church D.M. A next-generation human genome sequence. Science. 2022;376:34–35. doi: 10.1126/science.abo5367. PubMed DOI

Nurk S., Koren S., Rhie A., Rautiainen M., Bzikadze A.V., Mikheenko A., Phillippy A.M. The complete sequence of a human genome. Science. 2022;376:44–53. doi: 10.1126/science.abj6987. PubMed DOI PMC