Trap fluid of aquatic carnivorous plants of the genus Utricularia hosts specific microbiomes consisting of commensal pro- and eukaryotes of largely unknown ecology. We examined the characteristics and dynamics of bacteria and the three dominant eukaryotes, i.e. the algae-bearing ciliate Tetrahymena utriculariae (Ciliophora), a green flagellate Euglena agilis (Euglenophyta), and the alga Scenedesmus alternans (Chlorophyta), associated with the traps of Utricularia reflexa. Our study focused on ecological traits and life strategies of the highly abundant ciliate whose biomass by far exceeds that of other eukaryotes and bacteria independent of the trap age. The ciliate was the only bacterivore in the traps, driving rapid turnover of bacterial standing stock. However, given the large size of the ciliate and the cell-specific uptake rates of bacteria we estimated that bacterivory alone would likely be insufficient to support its apparent rapid growth in traps. We suggest that mixotrophy based on algal symbionts contributes significantly to the diet and survival strategy of the ciliate in the extreme (anaerobic, low pH) trap-fluid environment. We propose a revised concept of major microbial interactions in the trap fluid where ciliate bacterivory plays a central role in regeneration of nutrients bound in rapidly growing bacterial biomass.
- MeSH
- anaerobióza MeSH
- Bacteria MeSH
- biomasa MeSH
- Chlorophyta MeSH
- Ciliophora fyziologie MeSH
- ekologie * MeSH
- koncentrace vodíkových iontů MeSH
- Magnoliopsida chemie růst a vývoj mikrobiologie parazitologie MeSH
- mikrobiální společenstva MeSH
- stadia vývoje MeSH
- symbióza fyziologie MeSH
- Tetrahymena růst a vývoj fyziologie MeSH
- Publikační typ
- časopisecké články MeSH
BACKGROUND AND AIMS: Rootless carnivorous plants of the genus Utricularia are important components of many standing waters worldwide, as well as suitable model organisms for studying plant-microbe interactions. In this study, an investigation was made of the importance of microbial dinitrogen (N2) fixation in the N acquisition of four aquatic Utricularia species and another aquatic carnivorous plant, Aldrovanda vesiculosa. METHODS: 16S rRNA amplicon sequencing was used to assess the presence of micro-organisms with known ability to fix N2. Next-generation sequencing provided information on the expression of N2 fixation-associated genes. N2 fixation rates were measured following (15)N2-labelling and were used to calculate the plant assimilation rate of microbially fixed N2. KEY RESULTS: Utricularia traps were confirmed as primary sites of N2 fixation, with up to 16 % of the plant-associated microbial community consisting of bacteria capable of fixing N2. Of these, rhizobia were the most abundant group. Nitrogen fixation rates increased with increasing shoot age, but never exceeded 1·3 μmol N g(-1) d. mass d(-1). Plant assimilation rates of fixed N2 were detectable and significant, but this fraction formed less than 1 % of daily plant N gain. Although trap fluid provides conditions favourable for microbial N2 fixation, levels of nif gene transcription comprised <0·01 % of the total prokaryotic transcripts. CONCLUSIONS: It is hypothesized that the reason for limited N2 fixation in aquatic Utricularia, despite the large potential capacity, is the high concentration of NH4-N (2·0-4·3 mg L(-1)) in the trap fluid. Resulting from fast turnover of organic detritus, it probably inhibits N2 fixation in most of the microorganisms present. Nitrogen fixation is not expected to contribute significantly to N nutrition of aquatic carnivorous plants under their typical growth conditions; however, on an annual basis the plant-microbe system can supply nitrogen in the order of hundreds of mg m(-2) into the nutrient-limited littoral zone, where it may thus represent an important N source.
- MeSH
- amoniové sloučeniny analýza MeSH
- Bacteria genetika izolace a purifikace metabolismus MeSH
- bakteriální RNA chemie genetika MeSH
- Droseraceae metabolismus mikrobiologie MeSH
- dusík metabolismus MeSH
- ekologie MeSH
- ekosystém MeSH
- fixace dusíku * MeSH
- izotopy dusíku MeSH
- Magnoliopsida metabolismus mikrobiologie MeSH
- molekulární sekvence - údaje MeSH
- RNA ribozomální 16S chemie genetika MeSH
- sekvence nukleotidů MeSH
- sekvenční analýza RNA MeSH
- voda metabolismus MeSH
- výhonky rostlin metabolismus MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- srovnávací studie MeSH
In the present study, 193 Aspergillus strains were isolated from a total of 100 soil samples of pistachio orchards, which all of them were identified as Aspergillus flavus as the most abundant species of Aspergillus section Flavi existing in the environment. Approximately 59%, 81%, and 61% of the isolates were capable of producing aflatoxins (AFs), cyclopiazonic acid (CPA), and sclerotia, respectively. The isolates were classified into four chemotypes (I to IV) based on the ability to produce AFs and CPA. The resulting dendrogram of random amplified polymorphic DNA (RAPD) analysis of 24 selected A. flavus isolates demonstrated the formation of two separate clusters. Cluster 1 contained both aflatoxigenic and non-aflatoxigenic isolates (17 isolates), whereas cluster 2 comprised only aflatoxigenic isolates (7 isolates). All the isolates of cluster 2 produced significantly higher levels of AFs than those of cluster 1 and the isolates that produced both AFB(1) and AFB(2) were found only in cluster 2. RAPD genotyping allowed the differentiation of A. flavus from Aspergillus parasiticus as a closely related species within section Flavi. The present study has provided for the first time the relevant information on distribution and genetic diversity of different A. flavus populations from nontoxigenic to highly toxigenic enable to produce hazardous amounts of AFB(1) and CPA in soils of pistachio orchards. These fungi, either toxigenic or not-toxigenic, should be considered as potential threats for agriculture and public health.
- MeSH
- aflatoxiny metabolismus MeSH
- Aspergillus klasifikace genetika izolace a purifikace metabolismus MeSH
- fylogeneze MeSH
- genetická variace MeSH
- Magnoliopsida růst a vývoj mikrobiologie MeSH
- molekulární sekvence - údaje MeSH
- půdní mikrobiologie MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Geografické názvy
- Írán MeSH
Casuarinas are very important plants for their various uses and survival in adverse sites or harsh environments. As nitrogen fixation, in symbiosis with Frankia, is an important factor for the survival of these plants under various conditions, the basis for selecting both effective and tolerant Frankia strains and Casuarina spp., are provided. Enhancement of the symbiotic relationship between Frankia and Casuarina, by mycorrhizal infection and other biofertilizing microorganisms such as Bacillus and Azospirillum, is reflected by superior plant growth. Casuarina leaf litter is also a great source for both inorganic and organic nutrients. Therefore, careful management of the top soil layer under Casuarina trees is very important. Litter decomposition ratio is affected by many physical chemical and biological factors including temperature, moisture conditions, lignin, and C-to-N and N-to-P ratios in addition to soil biota. In general, here the above relations are discussed and an alleviation model is presented for important disturbances of natural and human origin made in soil and environment, especially in the dry regions. In conclusion, we suggest how to optimize the nitrogen fixation and plant growth under the prevalent conditions.
During a study of endophytic and saprotrophic fungi in the sapwood and phloem of broadleaf trees (Salix alba, Quercus robur, Ulmus laevis, Alnus glutinosa, Betula pendula) fungi belonging to an anamorphic coelomycetous genus not attributable to a described taxon were detected and isolated in pure culture. The new genus, Liberomyces, with two species, L. saliciphilus and L. macrosporus, is described. Both species have subglobose conidiomata containing holoblastic sympodial conidiogenous cells. The conidiomata dehisce irregularly or by ostiole and secrete a slimy suspension of conidia. The conidia are hyaline, narrowly allantoid with a typically curved distal end. In L. macrosporus simultaneous production of synanamorph with thin filamentous conidia was observed occasionally. The genus has no known teleomorph. Related sequences in the public databases belong to endophytes of angiosperms. Phylogenetic analysis revealed a position close to the Xylariales (Sordariomycetes), but family and order affiliation remained unclear.
- MeSH
- Ascomycota klasifikace genetika ultrastruktura MeSH
- bříza mikrobiologie MeSH
- DNA fungální MeSH
- dub (rod) mikrobiologie MeSH
- endofyty klasifikace ultrastruktura MeSH
- fylogeneze MeSH
- Magnoliopsida mikrobiologie MeSH
- mezerníky ribozomální DNA MeSH
- olše mikrobiologie MeSH
- ribozomální DNA MeSH
- Salix mikrobiologie MeSH
- sekvence nukleotidů MeSH
- sekvenční analýza DNA MeSH
- spory hub ultrastruktura MeSH
- stromy mikrobiologie MeSH
- Ulmus mikrobiologie MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Geografické názvy
- Československo MeSH
