normalization
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[Dissociation, forced normalization and epileptosis]
Alimentary pharmacology & therapeutics. Supplement, ISSN 0953-0673 vol. 23, suppl. 1, March 2006
49 s. : il., tab. ; 28 cm
With a rapidly-growing amount of biomedical information available only in textual form, there is considerable interest in applying NLP techniques to extract such information from the biomedical literature. Much of the research has paid special attention to extracting information about biomedical named entities. In this paper, we conducted a survey on biomedical named entity recognition and normalization, focusing on gene mention recognition and normalization. We believe this can help researchers to find work of their interest and interpret their own research.
Wire myograph is a device for the in vitro investigation of both, active and passive properties of arteries. Arteries from a variety of animal species, pathological states, and vascular beds were investigated using this method. We focus on the normalization procedure which is aimed to standardize experimental settings and, in part, to simulate physiological conditions. During normalization, it is determined the internal circumference of a vessel stretched to a tension that corresponds to the transmural pressure of 100 mm Hg (IC100). Once it is determined, the internal circumference is traditionally set to (0.9·IC100). However, this constant 0.9, called also the normalization factor (NF), was experimentally determined for rat small mesenteric arteries only. Therefore, the aim of our work was to show the influence of different NFs on the passive tension and reactivity of both, rat femoral arteries (FA) and the first branches of superior mesenteric arteries (MA). We found out that the maximal active wall tension of the FA was achieved at the NF value of 1.1, and that of the MA at 0.9. Considering the values of the active wall tension we suggest that higher reactivity and better signal-tonoise ratio in FA can be achieved when the NF is set at least to 1.0.
Dissociated states represent pathological conditions where psychological trauma may emerge in a variety of forms such as psychic dissociative symptoms (hallucinations, derealization etc.) or on the other hand as somatoform symptoms (paroxysms, loss of motor control, involuntary movements etc.). Recent findings suggest that neurophysiological level of dissociative phenomena may be linked to the same neurophysiological principles that emerge in multi-stable perception of ambiguous stimuli likely caused by competing interpretations with mutual exclusivity. At this time there is evidence that temporal lobe seizure activity can produce dissociative syndrome and from these findings may be inferred that temporal lobe epileptic activity existing independently of neurological focal may share common neurobiological mechanism with dissociative symptoms. This conceptualization of dissociative phenomena is also in accordance with findings that originate from the study of the relationship between epilepsy and mental illness. The relationship was for the first time described in Meduna's concept of antagonism between epilepsy and psychosis and from the study of forced normalization introduced by Landolt in 1950s. The findings reported similar pathological conditions as in dissociative states when psychopathological symptoms and paroxysms may represent two different forms of the pathological process. Following the concept of forced normalization Tellenbach in 1965 introduced the term alternative psychosis implicating that stopping seizures does not mean vanishing or inactivity of the pathological state and that the epilepsy is still active subcortically and supplies energy for psychopathological symptoms. In the present review chaos in brain neural networks as a possible explanation of the relationship between dissociation and epileptic activity has been suggested that represents testable hypothesis for future research.
- MeSH
- disociační poruchy etiologie patofyziologie psychologie MeSH
- epilepsie temporálního laloku komplikace MeSH
- financování organizované MeSH
- lidé MeSH
- mozek fyziologie MeSH
- neuronové sítě MeSH
- paměť MeSH
- psychotické poruchy patofyziologie MeSH
- vědomí MeSH
- Check Tag
- lidé MeSH
- Publikační typ
- přehledy MeSH
The merit of RNASeq data relies heavily on correct normalization. However, most methods assume that the majority of transcripts show no differential expression between conditions. This assumption may not always be correct, especially when one condition results in overexpression. We present a new method (NormQ) to normalize the RNASeq library size, using the relative proportion observed from RT-qPCR of selected marker genes. The method was compared against the popular median-of-ratios method, using simulated and real-datasets. NormQ produced more matches to differentially expressed genes in the simulated dataset and more distribution profile matches for both simulated and real datasets.
- Publikační typ
- časopisecké články MeSH
Metabolic flux investigations of cells and tissue samples are a rapidly advancing tool in diverse research areas. Reliable methods of data normalization are crucial for an adequate interpretation of results and to avoid a misinterpretation of experiments and incorrect conclusions. The most common methods for metabolic flux data normalization are to cell number, DNA and protein. Data normalization may be affected by a variety of factors, such as density, healthy state, adherence efficiency, or proportional seeding of cells. The mussel-derived adhesive Cell-Tak is often used to immobilize poorly adherent cells. Here we demonstrate that this coating strongly affects the fluorescent detection of DNA leading to an incorrect and highly variable normalization of metabolic flux data. Protein assays are much less affected and cell counting can virtually completely remove the effect of the coating. Cell-Tak coating also affects cell shape in a cell line-specific manner and may change cellular metabolism. Based on these observations we recommend cell counting as a gold standard normalization method for Seahorse metabolic flux measurements with protein content as a reasonable alternative.
- MeSH
- DNA * MeSH
- membránové proteiny * MeSH
- Publikační typ
- časopisecké články MeSH
The study examines the development of psychology in former Czechoslovakia during the period of "normalization" (1968-1989) and the challenges it faced under the communist regime. The restricted connection to Western psychology and the regime's control over all aspects of human activity negatively influenced the continuity of development in psychology. The regime demanded conformity, leaving individuals, including psychologists, in recurring states of internal conflict and intellectual discomfort when deciding how much to compromise in their personal and professional lives. The study identifies three groups of psychologists based on their adaptability to regime demands. The first group consists of those who aligned themselves with the regime, allowing them to hold positions of leadership and shape the conceptualization of the field. The second group comprises individuals who actively opposed the regime, facing significant limitations in their educational and career opportunities, and mostly being forced to leave the profession. The third group of psychologists belongs to the apolitical gray zone. A significant portion of individuals in this largest group passively complied with established norms and constraints, accepting the restrictions imposed on the development of Czechoslovak psychology. Fortunately, thanks to the persistent efforts of the proactive members of the gray zone and their willingness to endure significant discomfort, an even deeper decline of psychology during the normalization period was prevented. The study provides insights into the topics of education, research, Western influences, and adaptation to the communist regime within Czechoslovak psychology, illuminating the intricacies of living in that historical period. (PsycInfo Database Record (c) 2024 APA, all rights reserved).
- MeSH
- dějiny 20. století MeSH
- individualita * MeSH
- komunismus dějiny MeSH
- lidé MeSH
- psychologie * dějiny MeSH
- sociální konformita MeSH
- Check Tag
- dějiny 20. století MeSH
- lidé MeSH
- Publikační typ
- časopisecké články MeSH
- historické články MeSH
- Geografické názvy
- Československo MeSH
