Bacillus thuringiensis (Bt) is known for its Cry and Vip3A pesticidal proteins with high selectivity to target pests. Here, we assessed the potential of a novel neotropical Bt strain (UFT038) against six lepidopteran pests, including two Cry-resistant populations of fall armyworm, Spodoptera frugiperda. We also sequenced and analyzed the genome of Bt UFT038 to identify genes involved in insecticidal activities or encoding other virulence factors. In toxicological bioassays, Bt UFT038 killed and inhibited the neonate growth in a concentration-dependent manner. Bt UFT038 and HD-1 were equally toxic against S. cosmioides, S. frugiperda (S_Bt and R_Cry1 + 2Ab populations), Helicoverpa zea, and H. armigera. However, larval growth inhibition results indicated that Bt UFT038 was more toxic than HD-1 to S. cosmioides, while HD-1 was more active against Chrysodeixis includens. The draft genome of Bt UFT038 showed the cry1Aa8, cry1Ac11, cry1Ia44, cry2Aa9, cry2Ab35, and vip3Af5 genes. Besides this, genes encoding the virulence factors (inhA, plcA, piplC, sph, and chi1-2) and toxins (alo, cytK, hlyIII, hblA-D, and nheA-C) were also identified. Collectively, our findings reveal the potential of the Bt UFT038 strain as a source of insecticidal genes against lepidopteran pests, including S. cosmioides and S. frugiperda.
- MeSH
- Bacillus thuringiensis * genetika metabolismus MeSH
- bakteriální proteiny genetika metabolismus MeSH
- biologická kontrola škůdců MeSH
- endotoxiny metabolismus MeSH
- faktory virulence metabolismus MeSH
- Glycine max MeSH
- hemolyziny genetika metabolismus farmakologie MeSH
- insekticidy * farmakologie metabolismus MeSH
- larva MeSH
- lidé MeSH
- můry * MeSH
- novorozenec MeSH
- Spodoptera metabolismus MeSH
- zvířata MeSH
- Check Tag
- lidé MeSH
- novorozenec MeSH
- zvířata MeSH
- Publikační typ
- časopisecké články MeSH
Lactulose is commonly used in pharmacy for constipation and hepatic encephalopathy treatment. The prebiotic effect of lactulose is also often mentioned. However, its cryoprotective effect in combination with lecithin on the main representatives of probiotics has not been tested yet. The 12 taxa of bifidobacteria and Lactobacillaceae members were used for the purpose. These were mixed in a ratio of 1:1 with lactulose + lecithin (finally 5.0% and 1.25%, respectively; LL). The 25% glycerol (G+) solution and cultures themselves were applied as positive and negative controls, respectively. Bacterial suspensions were stored at a mild freezing temperature (-20°C) until the end of the experiment (210th day). The LL solution had a comparable (insignificant difference at the P-value = 0.05) cryoprotective effect as the positive control in five of six bifidobacteria and in three of six representatives of Lactobacillaceae. The better cryoprotective effect was revealed in other Lactobacillaceae. At the end of the experiment, the generally accepted therapeutic minimum (>107 Colony Forming Units/mL) was determined in LL solution in five bifidobacteria and four Lactobacillaceae strains. The presented results improve knowledge about long-term mild cryopreservation of the most commonly used probiotics and could contribute to developing new forms of (nutri)synbiotics.
- MeSH
- dioxiny škodlivé účinky MeSH
- endokrinní disruptory * farmakologie klasifikace škodlivé účinky MeSH
- fenoly škodlivé účinky MeSH
- fyziologie výživy dětí MeSH
- fyziologie výživy MeSH
- Glycine max škodlivé účinky MeSH
- kyseliny ftalové škodlivé účinky MeSH
- látky znečišťující životní prostředí škodlivé účinky MeSH
- lidé MeSH
- obezita etiologie MeSH
- zachování přírodních zdrojů metody MeSH
- Check Tag
- lidé MeSH
- Publikační typ
- populární práce MeSH
BACKGROUND: The advancement of sequencing technologies today has made a plethora of whole-genome re-sequenced (WGRS) data publicly available. However, research utilizing the WGRS data without further configuration is nearly impossible. To solve this problem, our research group has developed an interactive Allele Catalog Tool to enable researchers to explore the coding region allelic variation present in over 1,000 re-sequenced accessions each for soybean, Arabidopsis, and maize. RESULTS: The Allele Catalog Tool was designed originally with soybean genomic data and resources. The Allele Catalog datasets were generated using our variant calling pipeline (SnakyVC) and the Allele Catalog pipeline (AlleleCatalog). The variant calling pipeline is developed to parallelly process raw sequencing reads to generate the Variant Call Format (VCF) files, and the Allele Catalog pipeline takes VCF files to perform imputations, functional effect predictions, and assemble alleles for each gene to generate curated Allele Catalog datasets. Both pipelines were utilized to generate the data panels (VCF files and Allele Catalog files) in which the accessions of the WGRS datasets were collected from various sources, currently representing over 1,000 diverse accessions for soybean, Arabidopsis, and maize individually. The main features of the Allele Catalog Tool include data query, visualization of results, categorical filtering, and download functions. Queries are performed from user input, and results are a tabular format of summary results by categorical description and genotype results of the alleles for each gene. The categorical information is specific to each species; additionally, available detailed meta-information is provided in modal popups. The genotypic information contains the variant positions, reference or alternate genotypes, the functional effect classes, and the amino-acid changes of each accession. Besides that, the results can also be downloaded for other research purposes. CONCLUSIONS: The Allele Catalog Tool is a web-based tool that currently supports three species: soybean, Arabidopsis, and maize. The Soybean Allele Catalog Tool is hosted on the SoyKB website ( https://soykb.org/SoybeanAlleleCatalogTool/ ), while the Allele Catalog Tool for Arabidopsis and maize is hosted on the KBCommons website ( https://kbcommons.org/system/tools/AlleleCatalogTool/Zmays and https://kbcommons.org/system/tools/AlleleCatalogTool/Athaliana ). Researchers can use this tool to connect variant alleles of genes with meta-information of species.
- MeSH
- alely * MeSH
- Arabidopsis * genetika MeSH
- data mining * metody MeSH
- datové soubory jako téma * MeSH
- frekvence genu MeSH
- genotyp MeSH
- Glycine max * genetika MeSH
- internet * MeSH
- kukuřice setá * genetika MeSH
- metadata MeSH
- mutace MeSH
- pigmentace genetika MeSH
- rostlinné geny genetika MeSH
- software * MeSH
- substituce aminokyselin MeSH
- vegetační klid genetika MeSH
- vizualizace dat MeSH
- Publikační typ
- časopisecké články MeSH
Luštěniny jsou významnými potravinovými alergeny. K jejich hlavním alergenním složkám patří seed storage proteiny a PR-10 proteiny. Rozhodli jsme se prozkoumat senzibilizační profily specifických IgE protilátek na jednotlivé luštěniny u velkého souboru pacientů vyšetřených pomocí multiplexu ALEX®. Současně jsme sledovali anamnestický výskyt a charakter klinických reakcí na luštěniny a také senzibilizaci a klinické reakce na zkříženě reagující alergeny, konkrétně ořechy, semena a PR-10 proteiny. Vyšetřeno bylo celkem 685 pacientů. Téměř čtvrtina z nich (24 %) byla senzibilizována na některou z luštěnin. Mezi nimi převažovala senzibilizace na arašídy (n = 122) a sóju (n = 98), s velkým odstupem za nimi následovala čočka a příbuzné luštěniny (n = 11). V anamnéze udávali pacienti nejčastěji klinické reakce na arašídy (n = 17), nicméně sóju (4 pacienti) v tomto případě předstihly právě čočka a jí příbuzné luštěniny (celkem 11 pacientů). V klinických reakcích převažovaly reakce systémové, jejichž podkladem byla nejčastěji senzibilizace na seed storage proteiny. Čočka a příbuzné luštěniny sice nepatří mezi přední původce alergických reakcí na potraviny, avšak v našich podmínkách podle všeho významem předstihují sóju a měla by jim proto být věnována větší pozornost.
Legumes are important food allergens. Their major allergenic components are seed storage proteins and PR-10 proteins. We decided to investigate the sensitization profiles of specific IgE antibodies to distinct legumes in a large group of patients examined by multiplex system ALEX ®. We also studied the history of clinical reactions to legumes in sensitized patients and possible cross-reactivity to other allergens, i.e., tree nuts, seeds, or PR-10 proteins. Our study group included 689 patients; almost a quarter of them (24%) was sensitized to some legume. Sensitization to peanuts (n = 122) and soybean (n = 98) prevailed, being followed by sensitization to lentil and the relative legumes. A positive history of clinical reactions was most frequently to peanuts (17 patients); however, clinical reactions to lentil and the relative legumes prevailed (11 patients) over that induced by soybean (4 patients). The clinical reactions were predominantly systemic, mainly due to sensitization to seed storage proteins. Though lentil and the relative legumes are not considered to be prominent food allergens, their importance is significantly higher in our country compared to soybean, and thus we should pay increased attention to them.
- MeSH
- alergeny imunologie MeSH
- alergie na arašídy diagnóza imunologie MeSH
- čočka imunologie MeSH
- Fabaceae imunologie klasifikace MeSH
- Glycine max imunologie MeSH
- imunoglobulin E analýza MeSH
- lidé MeSH
- potravinová alergie * diagnóza etiologie imunologie MeSH
- zásobní proteiny semen imunologie MeSH
- zkřížené reakce imunologie MeSH
- Check Tag
- lidé MeSH
- MeSH
- čočka MeSH
- Fabaceae * MeSH
- Glycine max MeSH
- hrách setý MeSH
- lidé MeSH
- zdravá strava MeSH
- Check Tag
- lidé MeSH
- Publikační typ
- populární práce MeSH
In order to improve soybean's resistance to lodging, silicon (Si) solutions at concentrations of 0,100, 200,300 mg kg-1 were applied during the seedling stage. The Si accumulation in different parts of the plants, the photosynthetic parameters of leaves and chlorophyll content, the stem bending resistance, the expression of genes of lignin biosynthesis and associated enzyme activity and sap flow rates were measured at early and late growth stages. The potential mechanisms for how Si improve growth and shade tolerance, enhances lodging resistance and improves photosynthesis were analyzed to provide a theoretical basis for the use of Si amendments in agriculture. After application of Si at 200 mg kg-1, the net photosynthetic rate of soybeans increased by 46.4 % in the light and 33.3 % under shade. The application of Si increased chlorophyll content, and fresh weight of leaves, reduced leaf area and enhanced photosynthesis by increasing stomatal conductance. The activity of peroxidase (POD), 4-coumarate:CoA ligase (4CL), cinnamyl alcohol dehydrogenase (CAD) and phenylalanine ammonia-lyase (PAL) increased during pre-and post-growth periods, whereas Si also increased lignin accumulation and inhibited lodging. We concluded that Si affects the composition of plant cell walls components, mostly by altering linkages of non-cellulosic polymers and lignin. The modifications of the cell wall network through Si application could be a useful strategy to reduce shading stress in intercropping.
Ionizing radiation is a genotoxic anthropogenic stressor. It can cause heritable changes in the plant genome, which can be either adaptive or detrimental. There is still considerable uncertainty about the effects of chronic low-intensity doses since earlier studies reported somewhat contradictory conclusions. Our project focused on the recovery from the multiyear chronic ionizing radiation stress. Soybean (Glycine max) was grown in field plots located at the Chernobyl exclusion zone and transferred to the clean ground in the subsequent generation. We profiled proteome of mature seeds by two-dimensional gel electrophoresis. Overall, 15 differentially abundant protein spots were identified in the field comparison and 11 in the recovery generation, primarily belonging to storage proteins, disease/defense, and metabolism categories. Data suggested that during multigenerational growth in a contaminated environment, detrimental heritable changes were accumulated. Chlorophyll fluorescence parameters were measured on the late vegetative state, pointing to partial recovery of photosynthesis from stress imposed by contaminating radionuclides. A plausible explanation for the observed phenomena is insufficient provisioning of seeds by lower quality resources, causing a persistent effect in the offspring generation. Additionally, we hypothesized that immunity against phytopathogens was compromised in the contaminated field, but perhaps even primed in the clean ground, yet this idea requires direct functional validation in future experiments. Despite showing clear signs of physiological recovery, one season was not enough to normalize biochemical processes. Overall, our data contribute to the more informed agricultural radioprotection.
- MeSH
- 2D gelová elektroforéza MeSH
- černobylská havárie * MeSH
- fyziologický stres * MeSH
- Glycine max růst a vývoj fyziologie účinky záření MeSH
- ionizující záření * MeSH
- proteom účinky záření MeSH
- rostlinné proteiny metabolismus MeSH
- Publikační typ
- časopisecké články MeSH
- Geografické názvy
- Ukrajina MeSH
Soybean (Glycine max L.) has been extensively cultivated in maize-soybean relay intercropping systems in southwest China. However, during the early co-growth period, soybean seedlings suffer from severe shading by maize resulting in lodging and significant yield reduction. The purpose of the present research was to investigate the reasons behind severe lodging and yield loss. Therefore, four different soybean genotypes (B3, B15, B23, and B24) having different agronomic characteristics were cultivated in intercropping and monocropping planting patterns. The results showed that under different planting patterns, the stem resistance varied among genotypes (P < 0.01). The lodging resistance index of B3, B15, B23, and B24 genotypes was 70.9%, 60.5%, 65.2%, and 57.4%, respectively, under intercropping, among which the B24 genotype was less affected by the shade environment as there was little decrease in the lodging resistance index of this genotype under intercropping. The lignin content of B23 and B24 was significantly higher than that of B3 and B15 under both planting patterns. Under intercropping, the hemicellulose content of B23 and B24 stems was significantly higher than that of B3 and B15. Compared to the monocropping, the content of mannose in the structural carbohydrate of soybean stems was decreased in all genotypes except B23, but the difference was not significant. The content of xylose in the structural carbohydrate of soybean stems was significantly higher than that in B3 and B15. Mannose content showed no significant difference among genotypes. The arabinose content of B24 was significantly higher than that of B3, B15, and B23. The effective pod number, seed number per plant, seed weight per plant and yield of soybean plants were significantly decreased under intercropping. Conclusively, manipulation of structural and nonstructural carbohydrate rich soybean genotypes in intercropping systems could alleviate the yield loss due to lodging.
- MeSH
- celulosa genetika metabolismus MeSH
- fyziologický stres genetika fyziologie MeSH
- genotyp MeSH
- Glycine max genetika metabolismus MeSH
- lignin genetika metabolismus MeSH
- monosacharidy genetika metabolismus MeSH
- polysacharidy genetika metabolismus MeSH
- sacharosa metabolismus MeSH
- stonky rostlin genetika fyziologie MeSH
- Publikační typ
- časopisecké články MeSH
Chlorophyll fluorescence kinetic analysis has become an important tool in basic and applied research on plant physiology and agronomy. While early systems recorded the integrated kinetics of a selected spot or plant, later systems enabled imaging of at least the slower parts of the kinetics (20-ms time resolution). For faster events, such as the rise from the basic dark-adapted fluorescence yield to the maximum (OJIP transient), or the fluorescence yield decrease during reoxidation of plastoquinone A after a saturating flash, integrative systems are used because of limiting speed of the available imaging systems. In our new macroscopic and microscopic systems, the OJIP or plastonique A reoxidation fluorescence transients are directly imaged using an ultrafast camera. The advantage of such systems compared to nonimaging measurements is the analysis of heterogeneity of measured parameters, for example between the photosynthetic tissue near the veins and the tissue further away from the veins. Further, in contrast to the pump-and-probe measurement, direct imaging allows for measuring the transition of the plant from the dark-acclimated to a light-acclimated state via a quenching analysis protocol in which every supersaturating flash is coupled to a measurement of the fast fluorescence rise. We show that pump-and-probe measurement of OJIP is prone to artifacts, which are eliminated with the direct measurement. The examples of applications shown here, zinc deficiency and cadmium toxicity, demonstrate that this novel imaging platform can be used for detection and analysis of a range of alterations of the electron flow around PSII.
- MeSH
- Arabidopsis cytologie metabolismus MeSH
- Brassicaceae cytologie účinky léků metabolismus MeSH
- chlorofyl chemie metabolismus MeSH
- design vybavení MeSH
- fluorescence MeSH
- fluorescenční mikroskopie přístrojové vybavení metody MeSH
- fotosyntéza MeSH
- Glycine max cytologie účinky léků metabolismus MeSH
- kinetika MeSH
- listy rostlin cytologie MeSH
- mezofylové buňky metabolismus MeSH
- plastochinon metabolismus MeSH
- zinek metabolismus MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
