Enzyme activity
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Different types of enzymes such as lipases, several phosphatases, dehydrogenases, oxidases, amylases and others are well suited for the reactions in SC-CO(2). The stability and the activity of enzymes exposed to carbon dioxide under high pressure depend on enzyme species, water content in the solution and on the pressure and temperature of the reaction system. The three-dimensional structure of enzymes may be significantly altered under extreme conditions, causing their denaturation and consequent loss of activity. If the conditions are less adverse, the protein structure may be largely retained. Minor structural changes may induce an alternative active protein state with altered enzyme activity, specificity and stability.
- Klíčová slova
- enzyme, hydrolysis, inactivation, supercritical carbon dioxide, synthesis,
- MeSH
- aktivace enzymů účinky léků MeSH
- enzymy chemie metabolismus MeSH
- hydrolýza MeSH
- oxid uhličitý chemie metabolismus farmakologie MeSH
- stabilita enzymů MeSH
- teplota MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- přehledy MeSH
- Názvy látek
- enzymy MeSH
- oxid uhličitý MeSH
Cytochrome P450 (CYP450), and in particular CYP3A4, is the most abundantly expressed CYP450 isozyme implicated in many drug-drug and medicinal plant-drug interactions. Therefore, incorporation of CYP3A4 enzyme screening at an early stage of drug discovery is preferable in order to avoid enzymatic interactions. Here we present for the first time a paper-based CYP3A4 immobilized sol-gel-derived a platform using resorufin benzyl ether as a fluorogenic enzyme substrate used to investigate enzyme activity. The fluorescence intensity of the product can be simply quantified by using a handheld digital microscope and an image analysis software. The limit of quantitation was 0.35 μM with good precision (RSDs < 4.1%). Furthermore, the assay of CYP3A4 activity on the developed paper-based device provided comparable results with those obtained from conventional well-plates (p > 0.05), while offering simplicity and lower cost. Kinetic parameters of the immobilized CYP3A4 in sol-gel coated paper were calculated from the Lineweaver-Burk plot, including Michaelis constant (Km) and maximum velocity (Vmax), which were 2.71 ± 0.35 μM and 0.43 ± 0.05 μM/min, respectively. Moreover, a functional test of these devices was conducted by assessments of known CYP3A4 inhibitors (i.e. ketoconazole, itraconazole) and inducers (i.e. phenytoin, carbamazepine). To further demonstrate the broad range of uses, the devices were utilized to assay plant extracts i.e. Areca catechu seeds, Camellia sinensis leaves, Eclipta prostrata aerial part, providing results in good agreement with previous studies. Furthermore, the sol-gel immobilized enzyme stored at 4 °C can increase storage stability, offering the activity of 86.3 ± 0.4% after 3-weeks storage, equivalent to the activity of the free enzyme solution after 1-week storage. The developed paper-based devices offer versatility, portability and low-cost.
- Klíčová slova
- Cytochrome P450 enzyme, Fluorescence microscope, Paper-based devices, Sol-gel,
- MeSH
- aktivace enzymů MeSH
- benzenové deriváty chemie MeSH
- enzymy imobilizované analýza metabolismus MeSH
- ethery chemie MeSH
- gely chemie MeSH
- lidé MeSH
- molekulární struktura MeSH
- oxaziny chemie MeSH
- papír * MeSH
- systém (enzymů) cytochromů P-450 analýza metabolismus MeSH
- Check Tag
- lidé MeSH
- Publikační typ
- časopisecké články MeSH
- Názvy látek
- benzenové deriváty MeSH
- enzymy imobilizované MeSH
- ethery MeSH
- gely MeSH
- oxaziny MeSH
- resorufin MeSH Prohlížeč
- systém (enzymů) cytochromů P-450 MeSH
Laccases (benzenediol: oxygen oxidoreductases, EC 1.10.3.2) are copper-containing enzymes that catalyze the oxidative conversion of a variety of chemicals, such as mono-, oligo-, and polyphenols and aromatic amines. Laccases have been proposed to participate in the transformation of organic matter and xenobiotics as well as microbial interactions. Several laccase assays have been proposed and used in soils. Here, we show that the optimal pH conditions for the laccase substrates 2,2'-azinobis-3-ethylbenzothiazoline-6-sulfonic acid (ABTS, pH 3-5), 2,6-dimethoxyphenol (4-5.5), L-3,4-dihydroxyphenylalanine (DOPA; 4-6), guaiacol (3.5-5), 4-methylcatechol (3.5-5), and syringaldazine (5.5-7.0) are similar between purified laccases from Trametes versicolor and Pyricularia sp. and soil extracts; the substrate affinities of purified enzymes (K(M)) and soil extracts were also similar. The laccase assays showed specificity overlap with tyrosinase and ligninolytic peroxidases when hydrogen peroxide is present. The ABTS oxidation assay is able to reliably detect the presence of 13.5 pg mL(-1) or 0.199×10(-12) mol mL(-1) of T. versicolor laccase, which is three times more sensitive than the 2,6-dimethoxyphenol-based assay and more than 40 times more sensitive than any of the other assays. The low molecular mass soil-derived compounds and the isolated fulvic and humic acids influence the laccase assays and should be removed from the soil extracts before measurements of the enzyme activity are performed.
- MeSH
- artefakty MeSH
- benzopyrany farmakologie MeSH
- enzymatické testy metody MeSH
- huminové látky MeSH
- kinetika MeSH
- koncentrace vodíkových iontů MeSH
- lakasa metabolismus MeSH
- mitosporické houby enzymologie MeSH
- molekulová hmotnost MeSH
- půda * chemie MeSH
- Trametes enzymologie MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Názvy látek
- benzopyrany MeSH
- fulvic acid MeSH Prohlížeč
- huminové látky MeSH
- lakasa MeSH
- půda * MeSH
High-throughput profiling of key enzyme activities of carbon, nitrogen, and antioxidant metabolism is emerging as a valuable approach to integrate cell physiological phenotyping into a holistic functional phenomics approach. However, the analyses of the large datasets generated by this method represent a bottleneck, often keeping researchers from exploiting the full potential of their studies. We address these limitations through the exemplary application of a set of data evaluation and visualization tools within a case study. This includes the introduction of multivariate statistical analyses that can easily be implemented in similar studies, allowing researchers to extract more valuable information to identify enzymatic biosignatures. Through a literature meta-analysis, we demonstrate how enzyme activity profiling has already provided functional information on the mechanisms regulating plant development and response mechanisms to abiotic stress and pathogen attack. The high robustness of the distinct enzymatic biosignatures observed during developmental processes and under stress conditions underpins the enormous potential of enzyme activity profiling for future applications in both basic and applied research. Enzyme activity profiling will complement molecular -omics approaches to contribute to the mechanistic understanding required to narrow the genotype-to-phenotype knowledge gap and to identify predictive biomarkers for plant breeding to develop climate-resilient crops.
- Klíčová slova
- Abiotic stress response, enzyme activity profiling, enzyme activity signatures, functional phenomics, pathogen response, physiological phenotyping, plant development, plant phenotyping,
- MeSH
- fenomika * MeSH
- fenotyp MeSH
- fyziologický stres genetika MeSH
- šlechtění rostlin * MeSH
- vývoj rostlin genetika MeSH
- zemědělské plodiny genetika MeSH
- Publikační typ
- časopisecké články MeSH
- metaanalýza MeSH
- práce podpořená grantem MeSH
Amlodipine (AML) is available as a racemate, i.e., a mixture of R- and S-enantiomers. Its inhibitory potency towards nine cytochromes P450 (CYP) was studied to evaluate the drug-drug interactions between the enantiomers. Enzyme inhibition was evaluated using specific CYP substrates in human liver microsomes. With CYP3A, both enantiomers exhibited reversible and time-dependent inhibition. S-AML was a stronger reversible inhibitor of midazolam hydroxylation: the Ki values of S- and R-AML were 8.95 µM, 14.85 µM, respectively. Computational docking confirmed that the enantiomers interact differently with CYP3A: the binding free energy of S-AML in the active site was greater than that for R-AML (-7.6- vs. -6.7 kcal/mol). Conversely, R-AML exhibited more potent time-dependent inhibition of CYP3A activity (KI 8.22 µM, Kinact 0.065 min-1) than S-AML (KI 14.06 µM, Kinact 0.041 min-1). R-AML was also a significantly more potent inhibitor of CYP2C9 (Ki 12.11 µM/S-AML 21.45 µM) and CYP2C19 (Ki 5.97 µM/S-AML 7.22 μM. In conclusion, results indicate that clinical use of S-AML has an advantage not only because of greater pharmacological effect, but also because of fewer side effects and drug-drug interactions with cytochrome P450 substrates due to absence of R-AML.
- Klíčová slova
- amlodipine, cytochrome P450, drug–drug interactions, enantiomers, enzyme inhibition, stereoselectivity,
- MeSH
- amlodipin chemie farmakologie MeSH
- hydroxylace MeSH
- inhibitory cytochromu P450 CYP3A chemie farmakologie MeSH
- inhibitory cytochromu P450 chemie farmakologie MeSH
- jaterní mikrozomy metabolismus MeSH
- kinetika MeSH
- lékové interakce MeSH
- lidé MeSH
- midazolam metabolismus MeSH
- molekulární struktura MeSH
- simulace molekulového dockingu MeSH
- stereoizomerie MeSH
- systém (enzymů) cytochromů P-450 metabolismus MeSH
- termodynamika MeSH
- vazebná místa MeSH
- vztahy mezi strukturou a aktivitou MeSH
- Check Tag
- lidé MeSH
- Publikační typ
- časopisecké články MeSH
- Názvy látek
- amlodipin MeSH
- inhibitory cytochromu P450 CYP3A MeSH
- inhibitory cytochromu P450 MeSH
- midazolam MeSH
- systém (enzymů) cytochromů P-450 MeSH
This review comprehensively summarizes recent advances in the field of hydrazinecarboxamide (semicarbazide) derivatives, highlighting their significant therapeutic potential and a broad spectrum of biological activities. As a promising and privileged scaffold in medicinal chemistry, hydrazinecarboxamides have emerged as a versatile class of compounds with significant bioactive properties. Based on their substitutions, their structural diversity permits extensive chemical modifications to enhance their interactions with various biological targets to combat multiple disorders. Notable, this group of compounds has shown significant efficacy against numerous cancer cell lines through diverse mechanisms of action and potent inhibition of enzymes, including cholinesterases, carbonic anhydrases, cyclooxygenases, lipoxygenases, etc. Beyond these, they have also been investigated for their anticonvulsive, analgesic/anti-inflammatory, and antioxidant properties, with detailed structure-activity relationships. For many applications, the hybridization of hydrazinecarboxamides with other bioactive scaffolds, such as primaquine, is of particular interest and offers advantages. Despite their promises, challenges such as suboptimal physicochemical properties and selectivity issues of certain derivatives require further effort. The review aims to inspire future innovation in the design and development of new potential hydrazinecarboxamide-based drugs, addressing existing challenges and expanding their therapeutic applications.
- Klíčová slova
- Anti-inflammatory activity, Anticancer activity, Anticonvulsive activity, Enzyme inhibition, Hydrazinecarboxamides, Semicarbazides, Structure-activity relationship,
- MeSH
- antiflogistika farmakologie chemie MeSH
- antikonvulziva * farmakologie chemie MeSH
- antioxidancia * farmakologie chemie MeSH
- hydraziny * chemie farmakologie chemická syntéza MeSH
- inhibitory enzymů farmakologie chemie chemická syntéza MeSH
- lidé MeSH
- molekulární struktura MeSH
- protinádorové látky * farmakologie chemie MeSH
- semikarbazidy chemická syntéza chemie farmakologie MeSH
- vztahy mezi strukturou a aktivitou MeSH
- zvířata MeSH
- Check Tag
- lidé MeSH
- zvířata MeSH
- Publikační typ
- časopisecké články MeSH
- přehledy MeSH
- Názvy látek
- antiflogistika MeSH
- antikonvulziva * MeSH
- antioxidancia * MeSH
- hydraziny * MeSH
- inhibitory enzymů MeSH
- protinádorové látky * MeSH
- semikarbazidy MeSH
The renin angiotensin system (RAS) regulates fluid balance, blood pressure and maintains vascular tone. The potent vasoconstrictor angiotensin II (Ang II) produced by angiotensin-converting enzyme (ACE) comprises the classical RAS. The non-classical RAS involves the conversion of Ang II via ACE2 into the vasodilator Ang (1-7) to counterbalance the effects of Ang II. Furthermore, ACE2 converts AngA into another vasodilator named alamandine. The over activation of the classical RAS (increased vasoconstriction) and depletion of the non-classical RAS (decreased vasodilation) results in vascular dysfunction. Vascular dysfunction is the leading cause of atherosclerosis and cardiovascular disease (CVD). Additionally, local RAS is expressed in various tissues and regulates cellular functions. RAS dysregulation is involved in other several diseases such as inflammation, renal dysfunction and even cancer growth. An approach in restoring vascular dysfunction and other pathological diseases is to either increase the activity of ACE2 or reduce the effect of the classical RAS by counterbalancing Ang II effects. The antitrypanosomal agent, diminazene aceturate (DIZE), is one approach in activating ACE2. DIZE has been shown to exert beneficial effects in CVD experimental models of hypertension, myocardial infarction, type 1 diabetes and atherosclerosis. Thus, this review focuses on DIZE and its effect in several tissues such as blood vessels, cardiac, renal, immune and cancer cells.
- Klíčová slova
- angiotensin-converting enzyme II, cardiovascular disease, diminazene aceturate, endothelial dysfunction, renin angiotensin system,
- MeSH
- aktivace enzymů MeSH
- aktivátory enzymů škodlivé účinky terapeutické užití MeSH
- angiotensin-konvertující enzym 2 metabolismus MeSH
- diminazen škodlivé účinky analogy a deriváty terapeutické užití MeSH
- kardiovaskulární nemoci farmakoterapie enzymologie patofyziologie MeSH
- lidé MeSH
- nádory farmakoterapie enzymologie patofyziologie MeSH
- renin-angiotensin systém účinky léků MeSH
- zvířata MeSH
- Check Tag
- lidé MeSH
- zvířata MeSH
- Publikační typ
- časopisecké články MeSH
- přehledy MeSH
- Názvy látek
- ACE2 protein, human MeSH Prohlížeč
- aktivátory enzymů MeSH
- angiotensin-konvertující enzym 2 MeSH
- diminazen MeSH
- diminazene aceturate MeSH Prohlížeč
In the search for new biologically active chemotypes, several sildenafil analogs were prepared and characterized. The presence of the pyrazolo[4,3-e][1,2,4]triazine core is thought to be of interest for the enzyme inhibitory activity of these compounds. The designed derivatives incorporating the sildenafil scaffold were assayed as carbonic anhydrase inhibitors, and for their cytotoxic activity against MCF-7 and K562 cell lines. The X-ray analysis of one of these model compounds was performed and its crystal structure is described/compared to that of sildenafil.
- Klíčová slova
- DFT calculations, Pyrazolo[4,3-e][1,2,4]triazine, Sildenafil analogues, Sulfonamides, X-ray structure analysis,
- MeSH
- buňky K562 MeSH
- inhibitory enzymů chemická syntéza MeSH
- inhibitory fosfodiesterasy 5 chemická syntéza MeSH
- krystalografie rentgenová MeSH
- lidé MeSH
- MFC-7 buňky MeSH
- sildenafil citrát analogy a deriváty chemická syntéza MeSH
- Check Tag
- lidé MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Názvy látek
- inhibitory enzymů MeSH
- inhibitory fosfodiesterasy 5 MeSH
- sildenafil citrát MeSH
Generally, enzyme immobilization on nanoparticles leads to nano-conjugates presenting partially preserved, or even absent, biological properties. Notwithstanding, recent research demonstrated that the coupling to nanomaterials can improve the activity of immobilized enzymes. Herein, xanthine oxidase (XO) was immobilized by self-assembly on peculiar naked iron oxide nanoparticles (surface active maghemite nanoparticles, SAMNs). The catalytic activity of the nanostructured conjugate (SAMN@XO) was assessed by optical spectroscopy and compared to the parent enzyme. SAMN@XO revealed improved catalytic features with respect to the parent enzyme and was applied for the electrochemical studies of xanthine. The present example supports the nascent knowledge concerning protein conjugation to nanoparticle as a means for the modulation of biological activity.
- Klíčová slova
- catalytic properties, enzyme immobilization, metal nanoparticles, xanthine oxidases,
- Publikační typ
- časopisecké články MeSH
The application of enzymes is a crucial issue for current biotechnological application in pharmaceutical, as well as food and cosmetic industry. Effective platforms for enzyme immobilization are necessary for their industrial use in various biosynthesis procedures. Such platforms must provide high yield of immobilization and retain high activity at various conditions for their large-scale applications. Graphene derivatives such as hydrogenated graphene (graphane) and fluorographene can be applied for enzyme immobilization with close to 100 % yield that can result to activities of the composites significantly exceeding activity of free enzymes. The hydrophobic properties of graphene stoichiometric derivatives allowed for excellent non-covalent bonding of enzymes and their use in various organic solvents. The immobilized enzymes retain their high activities even at elevated temperatures. These findings show excellent application potential of enzyme biocatalysts immobilized on graphene stoichiometric derivatives.
- Klíčová slova
- biocatalysis, enzyme, graphene,
- MeSH
- aktivace enzymů MeSH
- biokatalýza MeSH
- enzymy imobilizované chemie MeSH
- fluorescenční barviva chemie MeSH
- grafit chemie MeSH
- hydrofobní a hydrofilní interakce MeSH
- koncentrace vodíkových iontů MeSH
- lipasa chemická syntéza MeSH
- nanostruktury chemie MeSH
- oxidace-redukce MeSH
- povrchové vlastnosti MeSH
- rozpouštědla chemie MeSH
- stabilita enzymů MeSH
- vysoká teplota MeSH
- Publikační typ
- časopisecké články MeSH
- Názvy látek
- enzymy imobilizované MeSH
- fluorescenční barviva MeSH
- grafit MeSH
- lipasa MeSH
- rozpouštědla MeSH