Non-Authenticity of Spring Barley Genotypes Revealed in Gene Bank Accessions
Status PubMed-not-MEDLINE Jazyk angličtina Země Švýcarsko Médium electronic
Typ dokumentu časopisecké články
Grantová podpora
MZE-RO1118
Ministry of Agriculture
51834/2017-MZE-17253
Ministry of Agriculture
PubMed
36432788
PubMed Central
PMC9698254
DOI
10.3390/plants11223059
PII: plants11223059
Knihovny.cz E-zdroje
- Klíčová slova
- Blumeria graminis f. sp. hordei, Hordeum vulgare, barley powdery mildew, gene banks, mislabelled genetic resources, resistance gene postulation, undesirable accession heterogeneity,
- Publikační typ
- časopisecké články MeSH
Plant research and breeding depends on plant genotypes; therefore, genotype authenticity of accessions is the basic requirement for users of gene banks. Surprisingly, this extremely important topic is rarely reported in the scientific community. Non-authentic are accessions that are mislabelled and undesirable genotypes of heterogeneous accessions. In barley, we try to uncover both named problems on the basis of postulated major powdery mildew resistance genes. These are diverse, environmentally stable and their use is well documented and suitable for genotype characterization. In this contribution, we postulate resistance genes in 15 varieties represented by 157 derived lines of 32 accessions originating from seven foreign gene banks and compare these findings with previous results including those 15 identically labelled varieties from our domestic gene bank. We found that 37.5% of the gene bank accessions investigated herein were heterogeneous, and at least 20.0% were mislabelled. A large-scale molecular characterisation of varieties is now being carried out, and using authentic varieties must be one of the key requirements. Therefore, accessions of each variety from a minimum of three gene banks whose identity has been verified by reliable methods should be compared before starting new experiments. These will involve molecular varietal characterisation to serve as a foundation for future plant science research and effective crop improvement.
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Yabe S., Iwata H., Jannink J.L. Impact of mislabeling on genomic selection in cassava breeding. Crop Sci. 2018;58:1470–1480. doi: 10.2135/cropsci2017.07.0442. PubMed DOI PMC
Dreiseitl A. Powdery mildew resistance in winter barley cultivars. Plant Breed. 2007;126:268–273. doi: 10.1111/j.1439-0523.2007.01348.x. DOI
Dreiseitl A., Zavřelová M. Identification of barley powdery mildew resistances in gene bank accessions and the use of gene diversity for verifying seed purity and authenticity. PLoS ONE. 2018;13:e0208719. doi: 10.1371/journal.pone.0208719. PubMed DOI PMC
Dreiseitl A. Heterogeneity of powdery mildew resistance revealed in accessions of the ICARDA wild barley collection. Front. Plant Sci. 2017;8:202. doi: 10.3389/fpls.2017.00202. PubMed DOI PMC
Dreiseitl A. Genotype heterogeneity in accessions of a winter barley core collection assessed on postulated specific powdery mildew resistance genes. Agronomy. 2021;11:513. doi: 10.3390/agronomy11030513. PubMed DOI PMC
Dreiseitl A., Nesvadba Z. Powdery mildew resistance genes in single-plant progenies derived from accessions of a winter barley core collection. Plants. 2021;10:1998. doi: 10.3390/plants10101988. PubMed DOI PMC
Dreiseitl A. Powdery mildew resistance phenotypes of wheat gene bank accessions. Biology. 2021;10:846. doi: 10.3390/biology10090846. PubMed DOI PMC
af Satra J.S., Troggio M., Odilbekov F., Sehic J., Mattisson H., Hjalmarsson I., Ingvarsson P.K., Garkava-Gustavsson L. Genetic status of the Swedish central collection of heirloom apple cultivars. Scientia Hortic. 2020;272:109599. doi: 10.1016/j.scienta.2020.109599. DOI
Shan F., Clarke H.C., Plummer J.A., Yan G., Siddique K.H.M. Geographical patterns of genetic variation in the world collections of wild annual Cicer characterized by amplified fragment length polymorphisms. Theor. Appl. Genet. 2005;110:381–391. doi: 10.1007/s00122-004-1849-8. PubMed DOI
Jreisat C.S., Laten H.M. Ribosomal RNA internal transcribed regions identify possible misidentification or mislabeling among Trifolium (Clover) specimens from germplasm collections. Crop Sci. 2017;57:322–326. doi: 10.2135/cropsci2016.07.0626. DOI
Zhang W., Sun Y.Z., Liu J., Xu C., Zou X.H., Chen X., Liu Y.L., Wu P., Yang X.Y., Zhou S.L. DNA barcoding of Oryza: Conventional, specific, and super barcodes. Plant Molec. Biol. 2021;105:215–228. doi: 10.1007/s11103-020-01054-3. PubMed DOI PMC
Girma G., Korie S., Dumet D., Franco J. Improvement of accession distinctiveness as an added value to the global worth of the yam (Dioscorea ssp.) genebank. Int. J. Conservation Sci. 2012;3:199–206.
van de Wouw M., van Treuren R., van Hintum T. Authenticity of old cultivars in genebank collections: A case study on Lettuce. Crop Sci. 2011;51:736–746. doi: 10.2135/cropsci2010.09.0511. DOI
Hempel P., Hohe A., Trankner C. Molecular Reconstruction of an Old Pedigree of Diploid and Triploid Hydrangea macrophylla Genotypes. Front. Plant Sci. 2018;9:429. doi: 10.3389/fpls.2018.00429. PubMed DOI PMC
Dreiseitl A. Specific resistance of barley to powdery mildew, its use and beyond. A concise critical review. Genes. 2020;11:971. doi: 10.3390/genes11090971. PubMed DOI PMC
Brown J.K.M., Jørgensen J.H. A catalogue of mildew resistance genes in European barley varieties. In: Jørgensen J.H., editor. Integrated Control of Cereal Mildews: Virulence and Their Change, Proceedings of the Second European Workshop on Integrated Control of Cereal Mildews, Risø National Laboratory, Roskilde, Denmark, 23–25 January 1990. Risø National Laboratory; Roskilde, Denmark: 1991. pp. 263–286.
Dreiseitl A., Jørgensen J.H. Powdery mildew resistance in Czech and Slovak barley cultivars. Plant Breed. 2000;119:203–209. doi: 10.1046/j.1439-0523.2000.00473.x. DOI
Dreiseitl A. Powdery mildew resistance genes in European barley cultivars registered in the Czech Republic from 2016 to 2020. Genes. 2022;13:1274. doi: 10.3390/genes13071274. PubMed DOI PMC
Volk G.M., Byrne P.F., Coyne C.J., Flint-Garcia S., Reeves P.A., Richards C. Integrating genomic and phenomic approaches to support plant genetic resources conservation and use. Plants. 2021;10:2260. doi: 10.3390/plants10112260. PubMed DOI PMC
Jørgensen J.H. Discovery, characterisation and exploitation of Mlo powdery mildew resistance in barley. Euphytica. 1992;63:141–152. doi: 10.1007/BF00023919. DOI
Xu Y.H., Jia Q.J., Zhou G.F., Zhang X.Q., Angessa T., Broughton S., Yan G., Zhang W.Y., Li C.D. Characterization of the sdw1 semi-dwarf gene in barley. BMC Plant Biol. 2017;17:11. doi: 10.1186/s12870-016-0964-4. PubMed DOI PMC
Jørgensen J.H., Jensen H.P. Powdery mildew resistance gene Ml-a8 (Reg1h8) in northwest European spring barley varieties. Barley Genet. Newsl. 1983;13:51–52.
Jørgensen J.H. Genetics of powdery mildew resistance in barley. Crit. Rev. Plant Sci. 1994;13:97–119. doi: 10.1080/07352689409701910. DOI
Hiura U., Heta H. Studies on the disease resistance in barley. III. Further studies on the physiologic races of Erysiphe graminis hordei in Japan. Ber. Ohara Inst. Landwirtsch. Biol. 1955;10:135–156.
Wiberg A. Sources of resistance to powdery mildew in barley. Hereditas. 1974;78:1–40. doi: 10.1111/j.1601-5223.1974.tb01426.x. PubMed DOI
Diez M.J., De la Rosa L., Martin I., Guasch L., Cartea M.E., Mallor C., Casals J., Simó J., Rivera A., Anastasio G., et al. Plant genebanks: Present situation and proposals for their improvement. The case of the Spanish network. Front. Plant Sci. 2018;9:1794. doi: 10.3389/fpls.2018.01794. PubMed DOI PMC
Czembor J.H. Resistance to powdery mildew in populations of barley landraces from Morocco. Australas. Plant Pathol. 2000;29:137–148. doi: 10.1071/AP00022. DOI
van Hintum T.J.L., Visser D.L. Duplication within and between germplasm collections. II Duplication in four European barley collections. Genet. Resourc. Crop Evol. 1995;42:135–145. doi: 10.1007/BF02539517. DOI
Jayakodi M., Padmarasu S., Haberer G., Bonthala V.S., Gundlach H., Monat C., Lux T., Kamal N., Lang D., Himmelbach A., et al. The barley pan-genome reveals the hidden legacy of mutation breeding. Nature. 2020;588:7837. doi: 10.1038/s41586-020-2947-8. PubMed DOI PMC
Jiang Y., Weise S., Graner A., Reif J.C. Using genome-wide predictions to assess the phenotypic variation of a barley (Hordeum sp.) gene bank collection for important agronomic traits and passport information. Frontiers Plant Sci. 2021;11:604781. doi: 10.3389/fpls.2020.604781. PubMed DOI PMC
Dreiseitl A. A novel resistance against powdery mildew found in winter barley cultivars. Plant Breed. 2019;138:840–845. doi: 10.1111/pbr.12730. DOI
Kølster P., Munk L., Stølen O., Løhde J. Near-isogenic barley lines with genes for resistance to powdery mildew. Crop Sci. 1986;26:903–907. doi: 10.2135/cropsci1986.0011183X002600050014x. DOI
Torp J., Jensen H.P., Jørgensen J.H. Powdery Mildew Resistance Genes in 106 Northwest European Spring Barley Cultivars. Royal Veterinary and Agricultural University; Copenhagen, Denmark: 1978. pp. 75–102. Year-book, 1978.
Flor H.H. Current status of the gene-for-gene concept. Annu. Rev. Phytopathol. 1971;9:275–296. doi: 10.1146/annurev.py.09.090171.001423. DOI
Kosman E., Chen X., Dreiseitl A., McCallum B., Lebeda A., Ben-Yehuda P., Gultyaeva E., Manisterski J. Functional variation of plant-pathogen interactions: New concept and methods for virulence data analyses. Phytopathology. 2019;109:1324–1330. doi: 10.1094/PHYTO-02-19-0041-LE. PubMed DOI
Dreiseitl A. Postulation of specific powdery mildew resistance genes in cereals: A widely used method and its detailed description. Pathogens. 2022;11:284. doi: 10.3390/pathogens11030284. PubMed DOI PMC