A woody-biochar was added to waste biomass during a composting process. The resulting compost-char was amended to a metal contaminated soil and two plant species, L. perenne and E. sativa, were grown in a pot experiment to determine 1) plant survival and stress factors, 2) uptake of metals to plants and, 3) chemical characteristics of sampled soils and pore waters. Compost supplemented with biochar after the composting process were also tested, as well as a commercially available compost, for comparison. Co-composting with biochar hastened the composting process, resulting in a composite material of reduced odour, increased maturity, circum-neutral pH and increased moisture retention than compost (increase by 3% of easily removable water content). When amended to the soil, CaCl2 extractable and pore water metals s were reduced by all compost treatments with little influence of biochar addition at any tested dose. Plant growth success was promoted furthest by the addition of co-composted biochar to the test soil, especially in the case of E. sativa. For both tested plant species significant reductions in plant metal concentrations (e.g. 8-times for Zn) were achieved, against the control soil, by compost, regardless of biochar addition. The results of this study demonstrate that the addition of biochar into the composting process can hasten the stability of the resulting compost-char, with more favourable characteristics as a soil amendment/improver than compost alone. This appears achievable whilst also maintaining the provision of available nutrients to soils and the reduction of metal mobility, and improved conditions for plant establishment.
- MeSH
- biodegradace MeSH
- biomasa MeSH
- Brassicaceae chemie růst a vývoj MeSH
- dřevěné a živočišné uhlí chemie MeSH
- dřevo chemie MeSH
- jílek chemie růst a vývoj MeSH
- kompostování * MeSH
- kovy analýza MeSH
- látky znečišťující půdu analýza MeSH
- půda chemie MeSH
- teoretické modely MeSH
- Publikační typ
- časopisecké články MeSH
The impact of nanosize was evaluated by comparing of the transcriptomic response of Arabidopsis thaliana roots to ZnO nanoparticles (nZnO), bulk ZnO, and ionic Zn(2+). Microarray analyses revealed 416 up- and 961 down-regulated transcripts (expression difference >2-fold, p [FDR] < 0.01) after a seven-day treatment with nZnO (average particle size 20 nm, concentration 4 mg L(-1)). Exposure to bulk ZnO resulted in 816 up- and 2179 down-regulated transcripts. The most dramatic changes (1711 transcripts up- and 3242 down-regulated) were caused by the presence of ionic Zn(2+) (applied as ZnSO4.7H20 at a concentration of 14.14 mg L(-1), corresponding to the amount of Zn contained in 4 mg L(-1) ZnO). Genes involved in stress response (e.g., to salt, osmotic stress or water deprivation) were the most relatively abundant group of gene transcripts up-regulated by all three Zn treatments while genes involved in cell organization and biogenesis (e.g., tubulins, arabinogalactan proteins) and DNA or RNA metabolism (e.g., histones) were the most relatively abundant groups of down-regulated transcripts. The similarity of the transcription profiles and the increasing number of changed transcripts correlating with the increased concentration of Zn(2+) in cultivation medium indicated that released Zn(2+) may substantially contribute to the toxic effect of nZnO because particle size has not demonstrated a decisive role.
- MeSH
- Arabidopsis účinky léků genetika MeSH
- kationty dvojmocné MeSH
- kořeny rostlin účinky léků genetika MeSH
- nanočástice chemie toxicita MeSH
- oxid zinečnatý chemie farmakologie toxicita MeSH
- síran zinečnatý chemie toxicita MeSH
- stanovení celkové genové exprese metody MeSH
- testy toxicity MeSH
- velikost částic MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- srovnávací studie MeSH
Computational methods can be applied in drug development for the identification of novel lead candidates, but also for the prediction of pharmacokinetic properties and potential adverse effects, thereby aiding to prioritize and identify the most promising compounds. In principle, several techniques are available for this purpose, however, which one is the most suitable for a specific research objective still requires further investigation. Within this study, the performance of several programs, representing common virtual screening methods, was compared in a prospective manner. First, we selected top-ranked virtual screening hits from the three methods pharmacophore modeling, shape-based modeling, and docking. For comparison, these hits were then additionally predicted by external pharmacophore- and 2D similarity-based bioactivity profiling tools. Subsequently, the biological activities of the selected hits were assessed in vitro, which allowed for evaluating and comparing the prospective performance of the applied tools. Although all methods performed well, considerable differences were observed concerning hit rates, true positive and true negative hits, and hitlist composition. Our results suggest that a rational selection of the applied method represents a powerful strategy to maximize the success of a research project, tightly linked to its aims. We employed cyclooxygenase as application example, however, the focus of this study lied on highlighting the differences in the virtual screening tool performances and not in the identification of novel COX-inhibitors.
- MeSH
- cyklooxygenasa 1 metabolismus MeSH
- cyklooxygenasa 2 metabolismus MeSH
- inhibitory cyklooxygenasy chemie farmakologie MeSH
- lidé MeSH
- molekulární modely MeSH
- molekulární struktura MeSH
- preklinické hodnocení léčiv MeSH
- vztah mezi dávkou a účinkem léčiva MeSH
- vztahy mezi strukturou a aktivitou MeSH
- Check Tag
- lidé MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
The essential requirement for the effective phytoremediation is selection of a plant species which should be metal tolerant, with high biomass production and known agronomic techniques. The above mentioned criteria are met by crop plant sorghum (Sorghum bicolor). The response of hydroponically grown S. bicolor plants to cadmium and zinc stress was followed. The impact of metal application on physiological parameters, including changes in chlorophylls contents and antioxidative enzymes activities, was followed during the stress progression. Cadmium and zinc were accumulated primarily in the roots of sorghum plants. However, elevation of metal concentrations in the media promoted their transfer to the shoots. Toxic effects of metals applied at lower concentrations were less serious in the shoots in comparison with their influence to the roots. When applied at higher concentrations, transfer of the metals into the leaves increased, causing growth reduction and leading to Chl loss and metal-induced chlorosis. Moreover, higher metal levels in the roots overcame the quenching capacity of peroxidase and glutathione transferase, which was associated with reduction of their activities. Fortification of antioxidant system by addition of glutathione significantly increased the accumulation of cadmium in the roots as well as in the shoots at the highest cadmium concentration applied.
- MeSH
- biodegradace MeSH
- biomasa MeSH
- glutathion metabolismus MeSH
- kadmium metabolismus toxicita MeSH
- kořeny rostlin enzymologie růst a vývoj metabolismus MeSH
- listy rostlin enzymologie růst a vývoj metabolismus MeSH
- peroxidasy metabolismus MeSH
- Sorghum enzymologie růst a vývoj metabolismus MeSH
- zinek metabolismus toxicita MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
