High-grain feeding used in the animal production is known to affect the host rumen bacterial community, but our understanding of consequent changes in goats is limited. This study was therefore aimed to evaluate bacterial population dynamics during 20 days adaptation of 4 ruminally cannulated goats to the high-grain diet (grain: hay - ratio of 40:60). The dietary transition of goats from the forage to the high-grain-diet resulted in the significant decrease of rumen fluid pH, which was however still higher than value established for acute or subacute ruminal acidosis was not diagnosed in studied animals. DGGE analysis demonstrated distinct ruminal microbial populations in hay-fed and grain-fed animals, but the substantial animal-to-animal variation were detected. Quantitative PCR showed for grain-fed animals significantly higher number of bacteria belonging to Clostridium leptum group at 10 days after the incorporation of corn into the diet and significantly lower concentration of bacteria belonging to Actinobacteria phylum at the day 20 after dietary change. Taxonomic distribution analysed by NGS at day 20 revealed the similar prevalence of the phyla Firmicutes and Bacteroidetes in all goats, significantly higher presence of the unclassified genus of groups of Bacteroidales and Ruminococcaceae in grain-fed animals and significantly higher presence the genus Prevotella and Butyrivibrio in the forage-fed animals. The three different culture-independent methods used in this study show that high proportion of concentrate in goat diet does not induce any serious disturbance of their rumen ecosystem and indicate the good adaptive response of caprine ruminal bacteria to incorporation of corn into the diet.
- Klíčová slova
- Bacteria, Creole goats, NGS, PCR-DGGE, Rumen, qPCR,
- MeSH
- Actinobacteria klasifikace genetika metabolismus MeSH
- bachor mikrobiologie MeSH
- Bacteroidetes klasifikace genetika metabolismus MeSH
- Butyrivibrio klasifikace genetika metabolismus MeSH
- Clostridium klasifikace genetika metabolismus MeSH
- fermentace MeSH
- Firmicutes klasifikace genetika metabolismus MeSH
- fylogeneze MeSH
- fyziologie výživy zvířat * MeSH
- koncentrace vodíkových iontů MeSH
- kozy MeSH
- krmivo pro zvířata analýza MeSH
- kukuřice setá chemie metabolismus MeSH
- lipnicovité chemie metabolismus MeSH
- píštěl žaludku MeSH
- Prevotella klasifikace genetika metabolismus MeSH
- Ruminococcus klasifikace genetika metabolismus MeSH
- sekvenční analýza DNA MeSH
- střevní mikroflóra fyziologie MeSH
- zvířata MeSH
- Check Tag
- zvířata MeSH
- Publikační typ
- časopisecké články MeSH
The mammalian gastrointestinal (GI) microbiome, which plays indispensable roles in host nutrition and health, is affected by numerous intrinsic and extrinsic factors. Among them, antibiotic (ATB) treatment is reported to have a significant effect on GI microbiome composition in humans and other animals. However, the impact of ATBs on the GI microbiome of free-ranging or even captive great apes remains poorly characterized. Here, we investigated the effect of cephalosporin treatment (delivered by intramuscular dart injection during a serious respiratory outbreak) on the GI microbiome of a wild habituated group of western lowland gorillas (Gorilla gorilla gorilla) in the Dzanga Sangha Protected Areas, Central African Republic. We examined 36 fecal samples from eight individuals, including samples before and after ATB treatment, and characterized the GI microbiome composition using Illumina-MiSeq sequencing of the bacterial 16S rRNA gene. The GI microbial profiles of samples from the same individuals before and after ATB administration indicate that the ATB treatment impacts GI microbiome stability and the relative abundance of particular bacterial taxa within the colonic ecosystem of wild gorillas. We observed a statistically significant increase in Firmicutes and a decrease in Bacteroidetes levels after ATB treatment. We found disruption of the fibrolytic community linked with a decrease of Ruminoccocus levels as a result of ATB treatment. Nevertheless, the nature of the changes observed after ATB treatment differs among gorillas and thus is dependent on the individual host. This study has important implications for ecology, management, and conservation of wild primates.
- Klíčová slova
- Antibiotics, Bacteria, Gastrointestinal microbiome, Gorilla, Illumina MiSeq, Medical treatment,
- MeSH
- antibakteriální látky farmakologie MeSH
- Bacteroidetes růst a vývoj MeSH
- cefalosporiny farmakologie MeSH
- feces mikrobiologie MeSH
- Firmicutes růst a vývoj MeSH
- Gorilla gorilla mikrobiologie MeSH
- nemoci lidoopů farmakoterapie MeSH
- RNA ribozomální 16S genetika MeSH
- Ruminococcus růst a vývoj MeSH
- střevní mikroflóra účinky léků MeSH
- zvířata MeSH
- Check Tag
- zvířata MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Research Support, U.S. Gov't, Non-P.H.S. MeSH
- Geografické názvy
- Středoafrická republika MeSH
- Názvy látek
- antibakteriální látky MeSH
- cefalosporiny MeSH
- RNA ribozomální 16S MeSH
A decrease in the abundance and biodiversity of intestinal bacteria within the Firmicutes phylum has been associated with inflammatory bowel disease (IBD). In particular, the anti-inflammatory bacterium Faecalibacterium prausnitzii, member of the Firmicutes phylum and one of the most abundant species in healthy human colon, is underrepresented in the microbiota of IBD patients. The aim of this study was to investigate the immunomodulatory properties of F. prausnitzii strain A2-165, the biofilm forming strain HTF-F and the extracellular polymeric matrix (EPM) isolated from strain HTF-F. For this purpose, the immunomodulatory properties of the F. prausnitzii strains and the EPM were studied in vitro using human monocyte-derived dendritic cells. Then, the capacity of the F. prausnitzii strains and the EPM of HTF-F to suppress inflammation was assessed in vivo in the mouse dextran sodium sulphate (DSS) colitis model. The F. prausnitzii strains and the EPM had anti-inflammatory effects on the clinical parameters measured in the DSS model but with different efficacy. The immunomodulatory effects of the EPM were mediated through the TLR2-dependent modulation of IL-12 and IL-10 cytokine production in antigen presenting cells, suggesting that it contributes to the anti-inflammatory potency of F. prausnitzii HTF-F. The results show that F. prausnitzii HTF-F and its EPM may have a therapeutic use in IBD.
- MeSH
- antigeny povrchové metabolismus MeSH
- cytokiny genetika metabolismus MeSH
- dendritické buňky imunologie metabolismus MeSH
- extracelulární matrix metabolismus MeSH
- fenotyp MeSH
- forkhead transkripční faktory genetika metabolismus MeSH
- genetická transkripce MeSH
- idiopatické střevní záněty etiologie metabolismus patologie MeSH
- kolitida chemicky indukované genetika imunologie metabolismus mikrobiologie MeSH
- lymfatické uzliny imunologie metabolismus MeSH
- mediátory zánětu metabolismus MeSH
- modely nemocí na zvířatech MeSH
- myši MeSH
- Ruminococcus metabolismus ultrastruktura MeSH
- síran dextranu škodlivé účinky MeSH
- slezina imunologie metabolismus MeSH
- střevní sliznice metabolismus mikrobiologie patologie MeSH
- toll-like receptor 2 genetika metabolismus MeSH
- zvířata MeSH
- Check Tag
- myši MeSH
- ženské pohlaví MeSH
- zvířata MeSH
- Publikační typ
- časopisecké články MeSH
- Názvy látek
- antigeny povrchové MeSH
- cytokiny MeSH
- forkhead transkripční faktory MeSH
- FOXP3 protein, human MeSH Prohlížeč
- mediátory zánětu MeSH
- síran dextranu MeSH
- toll-like receptor 2 MeSH
The expression of Ruminococcus flavefaciens 007S cellulases in different incubation time points (growth stages) and their substrate inducibility were analyzed by comparing the zymogram expression profiles of cultures grown on insoluble cellulose (Avicel) with cellobiose-grown cultures. The molecular weights of the enzymes were compared to (putative) cellulases encoded in the R. flavefaciens FD-1 genome.
- MeSH
- bakteriální proteiny chemie genetika metabolismus MeSH
- celobiosa metabolismus MeSH
- celulasy chemie genetika metabolismus MeSH
- celulosa metabolismus MeSH
- enzymatické testy MeSH
- exprese genu MeSH
- molekulární sekvence - údaje MeSH
- molekulová hmotnost MeSH
- Ruminococcus chemie enzymologie genetika růst a vývoj MeSH
- terciární struktura proteinů MeSH
- Publikační typ
- časopisecké články MeSH
- Názvy látek
- bakteriální proteiny MeSH
- celobiosa MeSH
- celulasy MeSH
- celulosa MeSH
One of the main mechanisms of nanoparticle toxicity is known to be the generation of reactive oxygen species (ROS) which primarily damage cell membranes. However, very limited data on membrane effects in anaerobic environments (where ROS could not be the cause of membrane damage) are available. In the following study, rumen anaerobe Ruminococcus flavefaciens 007C was used as a bacterial model to assess the potential effects of Al(2)O(3) and TiO(2) nanoparticles on membranes in an anaerobic environment. Fatty acid profiles of cultures after exposure to Al(2)O(3) or TiO(2) nanoparticles were analyzed and compared with the profiles of non-exposed cultures or cultures exposed to bulk materials. Analysis revealed dose-effect changes in membrane composition exclusively when cells were exposed to Al(2)O(3) nanoparticles in a concentration range of 3-5 g/L, but were not present in cultures exposed to bulk material. On the other hand, the tested concentrations of nano-TiO(2) did not significantly affect the membrane profile of the exposed bacterium. The results suggest the possibility that Al(2)O(3) induces changes in bacterial membranes by direct physical interaction, which was supported by TEM image analysis.
- MeSH
- anaerobióza MeSH
- buněčná membrána účinky léků metabolismus MeSH
- mastné kyseliny metabolismus MeSH
- metabolom účinky léků MeSH
- nanočástice toxicita ultrastruktura MeSH
- oxid hlinitý toxicita MeSH
- Ruminococcus účinky léků metabolismus MeSH
- titan toxicita MeSH
- zvířata MeSH
- Check Tag
- zvířata MeSH
- Publikační typ
- časopisecké články MeSH
- Názvy látek
- mastné kyseliny MeSH
- oxid hlinitý MeSH
- titan MeSH
- titanium dioxide MeSH Prohlížeč
The addition of 100-300 mmol/L of acetic, propionic, butyric or lactic acids (short-chain acids), or of acetic, propionic, and butyric acids (volatile fatty acids, VFA) mixtures increased the degradation of carboxymethyl cellulose (CMC) by R. albus (7.5 to 46 and 6 to 39 %, respectively). Differences among individual acids were observed at 300 mmol/L whereas VFA mixtures differed at 100 mmol/L. When assayed at the same concentration, CMCase activity was increased less by NaCl than by the short-chain acids, whereas ethylene glycol decreased the activity. Since osmolarity and/or ionic strength changes in the medium cannot completely account for the observed increases of carboxymethylcellulase (CMCase) activity, it is suggested that the anions of short-chain acids produce changes in the reaction media polarity that contribute to the effects observed. Alterations in the media could also bring about conformational changes in CMCase leading to increased rates of reaction and subsequent increases in CMC degradation. Finally, explanations for the observed phenomena based on the direct effect of the compounds tested on the cellulosome complex, its domains, and/or its component enzymes are proposed.
- MeSH
- acetáty farmakologie MeSH
- bachor mikrobiologie MeSH
- butyráty farmakologie MeSH
- celulasa metabolismus MeSH
- chlorid sodný farmakologie MeSH
- propionáty farmakologie MeSH
- Ruminococcus enzymologie MeSH
- zvířata MeSH
- Check Tag
- zvířata MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Názvy látek
- acetáty MeSH
- butyráty MeSH
- carboxymethylcellulase MeSH Prohlížeč
- celulasa MeSH
- chlorid sodný MeSH
- propionáty MeSH
The main representatives of bacteria in the human colon were investigated by specific PCR and denaturing gradient gel electrophoresis (DGGE). Prevalent in both cases were species of Bifidobacterium, Clostridium, Bacteroides, Faecalibacterium and Eubacterium. Simultaneously, cellulolytic bacteria were isolated from the human feces. The largest proportion was represented by ruminococcus-like isolates. Their presence was confirmed both by PCR and DGGE methods; the latter one was able to give more comprehensive data about the composition of bacterial population in the human colon chyme.
- MeSH
- Bacteria klasifikace genetika izolace a purifikace metabolismus MeSH
- Bacteroides klasifikace genetika izolace a purifikace metabolismus MeSH
- Bifidobacterium klasifikace genetika izolace a purifikace metabolismus MeSH
- celulasa biosyntéza MeSH
- celulosa metabolismus MeSH
- Clostridium klasifikace genetika izolace a purifikace metabolismus MeSH
- DNA bakterií analýza izolace a purifikace MeSH
- DNA fingerprinting MeSH
- elektroforéza v polyakrylamidovém gelu metody MeSH
- Eubacterium klasifikace genetika izolace a purifikace metabolismus MeSH
- geny rRNA genetika MeSH
- kolon mikrobiologie MeSH
- lidé MeSH
- polymerázová řetězová reakce MeSH
- ribozomální DNA analýza izolace a purifikace MeSH
- RNA ribozomální 16S genetika MeSH
- Ruminococcus klasifikace genetika izolace a purifikace metabolismus MeSH
- Check Tag
- lidé MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Názvy látek
- celulasa MeSH
- celulosa MeSH
- DNA bakterií MeSH
- ribozomální DNA MeSH
- RNA ribozomální 16S MeSH
