Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens
Jazyk angličtina Země Spojené státy americké Médium print-electronic
Typ dokumentu časopisecké články, metaanalýza, Research Support, N.I.H., Extramural, práce podpořená grantem
Grantová podpora
R03DK099564
NIDDK NIH HHS - United States
P30 DK079310
NIDDK NIH HHS - United States
R01DK082753
NIDDK NIH HHS - United States
K23 DK090207
NIDDK NIH HHS - United States
R21 DK098531
NIDDK NIH HHS - United States
R03 DK099564
NIDDK NIH HHS - United States
R21DK09853
NIDDK NIH HHS - United States
Howard Hughes Medical Institute - United States
UL1 TR000142
NCATS NIH HHS - United States
G1002528
Medical Research Council - United Kingdom
R01 DK082753
NIDDK NIH HHS - United States
K23DK090207
NIDDK NIH HHS - United States
R01 DK103184
NIDDK NIH HHS - United States
R01 DK095510
NIDDK NIH HHS - United States
R01DK095510
NIDDK NIH HHS - United States
PubMed
25305756
PubMed Central
PMC4213311
DOI
10.1038/ng.3118
PII: ng.3118
Knihovny.cz E-zdroje
- MeSH
- antigeny CD11b genetika MeSH
- celogenomová asociační studie MeSH
- genetická pleiotropie genetika MeSH
- genetické lokusy genetika MeSH
- HLA-D antigeny genetika MeSH
- IgA nefropatie genetika MeSH
- imunita genetika MeSH
- interakce hostitele a patogenu genetika MeSH
- jednonukleotidový polymorfismus genetika MeSH
- lidé MeSH
- protoonkogenní proteiny c-vav genetika MeSH
- signální adaptorové proteiny CARD genetika MeSH
- střeva imunologie parazitologie MeSH
- věk při počátku nemoci MeSH
- Check Tag
- lidé MeSH
- Publikační typ
- časopisecké články MeSH
- metaanalýza MeSH
- práce podpořená grantem MeSH
- Research Support, N.I.H., Extramural MeSH
- Názvy látek
- antigeny CD11b MeSH
- CARD9 protein, human MeSH Prohlížeč
- HLA-D antigeny MeSH
- ITGAM protein, human MeSH Prohlížeč
- protoonkogenní proteiny c-vav MeSH
- signální adaptorové proteiny CARD MeSH
- VAV3 protein, human MeSH Prohlížeč
We performed a genome-wide association study (GWAS) of IgA nephropathy (IgAN), the most common form of glomerulonephritis, with discovery and follow-up in 20,612 individuals of European and East Asian ancestry. We identified six new genome-wide significant associations, four in ITGAM-ITGAX, VAV3 and CARD9 and two new independent signals at HLA-DQB1 and DEFA. We replicated the nine previously reported signals, including known SNPs in the HLA-DQB1 and DEFA loci. The cumulative burden of risk alleles is strongly associated with age at disease onset. Most loci are either directly associated with risk of inflammatory bowel disease (IBD) or maintenance of the intestinal epithelial barrier and response to mucosal pathogens. The geospatial distribution of risk alleles is highly suggestive of multi-locus adaptation, and genetic risk correlates strongly with variation in local pathogens, particularly helminth diversity, suggesting a possible role for host-intestinal pathogen interactions in shaping the genetic landscape of IgAN.
3 Medizinische Klinik Universitätsklinikum Hamburg Eppendorf Hamburg Germany
Centre National de Génotypage Commissariat à l'Energie Atomique Institut de Génomique Evry France
Department of Medical and Surgical Sciences University of Foggia Foggia Italy
Department of Medicine University of Alabama at Birmingham Birmingham Alabama USA
Department of Microbiology University of Alabama at Birmingham Birmingham Alabama USA
Department of Nephrology 2nd University of Naples Naples Italy
Department of Nephrology and Dialysis G Brotzu Hospital Cagliari Italy
Department of Nephrology RWTH University of Aachen Aachen Germany
Department of Pediatrics and Nephrology Medical University of Warsaw Warsaw Poland
Division of Clinical Nephrology and Rheumatology Niigata University Niigata Japan
Division of Nephrology and Dialysis Gorizia Hospital Gorizia Italy
Division of Nephrology and Dialysis Infermi Hospital Rimini Italy
Division of Nephrology and Dialysis Sandro Pertini Hospital Rome Italy
Division of Nephrology and Renal Transplantation Carreggi Hospital Florence Italy
Division of Nephrology Azienda Ospedaliero Universitaria Ospedali Riuniti di Trieste Trieste Italy
Division of Nephrology Cannizzaro Hospital Catania Italy
Division of Nephrology Dialysis and Renal Transplantation Riuniti Hospital Ancona Italy
Division of Nephrology Dialysis and Transplantation Giannina Gaslini Institute Genova Italy
Division of Nephrology Istanbul Faculty of Medicine Istanbul University Istanbul Turkey
Krysiewicza Children's Hospital Poznań Poland
Nephrology and Dialysis Hospital of Viterbo Viterbo Italy
Nephrology and Dialysis Unit Humanitas Clinical and Research Center Milan Italy
Nephrology and Dialysis Unit Ospedali di Cirié e Chivasso Cirié Turin Italy
Nephrology Dialysis and Transplantation Unit Regina Margheritra Hospital Turin Italy
Renal Division DMCO San Paolo Hospital School of Medicine University of Milan Milan Italy
Unità Operativa di Nefrologia e Dialisi Ospedale di Acireale Acireale Italy
University College London Centre for Nephrology Royal Free Hospital Pond Street London UK
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PHS000431.V1.P1, PHS000431.V2.P1