Amino acid oxidation of the D1 and D2 proteins by oxygen radicals during photoinhibition of Photosystem II
Jazyk angličtina Země Spojené státy americké Médium print-electronic
Typ dokumentu časopisecké články, práce podpořená grantem, Research Support, U.S. Gov't, Non-P.H.S.
PubMed
28265052
PubMed Central
PMC5358366
DOI
10.1073/pnas.1618922114
PII: 1618922114
Knihovny.cz E-zdroje
- Klíčová slova
- Photosystem II, mass spectrometry, photo inhibition, photosynthesis, reactive oxygen species,
- MeSH
- aminokyseliny chemie metabolismus MeSH
- antioxidancia metabolismus MeSH
- chloridy metabolismus MeSH
- elektronová paramagnetická rezonance MeSH
- fotosystém II - proteinový komplex chemie metabolismus MeSH
- hmotnostní spektrometrie MeSH
- hydroxylový radikál metabolismus MeSH
- kyslík metabolismus MeSH
- molekulární konformace MeSH
- molekulární modely MeSH
- oxidace-redukce * MeSH
- reaktivní formy kyslíku metabolismus MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Research Support, U.S. Gov't, Non-P.H.S. MeSH
- Názvy látek
- aminokyseliny MeSH
- antioxidancia MeSH
- chloridy MeSH
- fotosystém II - proteinový komplex MeSH
- hydroxylový radikál MeSH
- kyslík MeSH
- reaktivní formy kyslíku MeSH
The Photosystem II reaction center is vulnerable to photoinhibition. The D1 and D2 proteins, lying at the core of the photosystem, are susceptible to oxidative modification by reactive oxygen species that are formed by the photosystem during illumination. Using spin probes and EPR spectroscopy, we have determined that both O2•- and HO• are involved in the photoinhibitory process. Using tandem mass spectroscopy, we have identified a number of oxidatively modified D1 and D2 residues. Our analysis indicates that these oxidative modifications are associated with formation of HO• at both the Mn4O5Ca cluster and the nonheme iron. Additionally, O2•- appears to be formed by the reduction of O2 at either PheoD1 or QA Early oxidation of D1:332H, which is coordinated with the Mn1 of the Mn4O5Ca cluster, appears to initiate a cascade of oxidative events that lead to the oxidative modification of numerous residues in the C termini of the D1 and D2 proteins on the donor side of the photosystem. Oxidation of D2:244Y, which is a bicarbonate ligand for the nonheme iron, induces the propagation of oxidative reactions in residues of the D-de loop of the D2 protein on the electron acceptor side of the photosystem. Finally, D1:130E and D2:246M are oxidatively modified by O2•- formed by the reduction of O2 either by PheoD1•- or QA•- The identification of specific amino acid residues oxidized by reactive oxygen species provides insights into the mechanism of damage to the D1 and D2 proteins under light stress.
Zobrazit více v PubMed
Vinyard DJ, Ananyev GM, Dismukes GC. Photosystem II: The reaction center of oxygenic photosynthesis. Annu Rev Biochem. 2013;82:577–606. PubMed
Shen JR. The structure of Photosystem II and the mechanism of water oxidation in photosynthesis. Annu Rev Plant Biol. 2015;66:23–48. PubMed
Umena Y, Kawakami K, Shen J-R, Kamiya N. Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 Å. Nature. 2011;473(7345):55–60. PubMed
Suga M, et al. Native structure of photosystem II at 1.95 Å resolution viewed by femtosecond X-ray pulses. Nature. 2015;517(7532):99–103. PubMed
Ago H, et al. Novel features of eukaryotic Photosystem II revealed by its crystal structure analysis from a red alga. J Biol Chem. 2016;291(11):5676–5687. PubMed PMC
Wei X, et al. Structure of spinach photosystem II-LHCII supercomplex at 3.2 Å resolution. Nature. 2016;534(7605):69–74. PubMed
Pospíšil P. Production of reactive oxygen species by photosystem II. Biochim Biophys Acta. 2009;1787(10):1151–1160. PubMed
Pospíšil P. Molecular mechanisms of production and scavenging of reactive oxygen species by photosystem II. Biochim Biophys Acta. 2012;1817(1):218–231. PubMed
Fischer BB, Hideg É, Krieger-Liszkay A. Production, detection, and signaling of singlet oxygen in photosynthetic organisms. Antioxid Redox Signal. 2013;18(16):2145–2162. PubMed
Telfer A. Singlet oxygen production by PSII under light stress: Mechanism, detection and the protective role of β-carotene. Plant Cell Physiol. 2014;55(7):1216–1223. PubMed PMC
Chen G-X, Kazimir J, Cheniae GM. Photoinhibition of hydroxylamine-extracted photosystem II membranes: Studies of the mechanism. Biochemistry. 1992;31(45):11072–11083. PubMed
Mano J, Takahashi M, Asada K. Oxygen evolution from hydrogen peroxide in photosystem II: Flash induced catalytic activity of water-oxidizing photosystem II membranes. Biochemistry. 1987;26:2495–2501.
Pospíšil P, Šnyrychová I, Nauš J. Dark production of reactive oxygen species in photosystem II membrane particles at elevated temperature: EPR spin-trapping study. Biochim Biophys Acta. 2007;1767(6):854–859. PubMed
Pospíšil P, Arató A, Krieger-Liszkay A, Rutherford AW. Hydroxyl radical generation by photosystem II. Biochemistry. 2004;43(21):6783–6792. PubMed
Yamamoto Y. Quality control of photosystem II. Plant Cell Physiol. 2001;42(2):121–128. PubMed
Jansen MA, Mattoo AK, Edelman M. D1-D2 protein degradation in the chloroplast. Complex light saturation kinetics. Eur J Biochem. 1999;260(2):527–532. PubMed
Frankel LK, Sallans L, Limbach PA, Bricker TM. Identification of oxidized amino acid residues in the vicinity of the Mn(4)CaO(5) cluster of Photosystem II: Implications for the identification of oxygen channels within the Photosystem. Biochemistry. 2012;51(32):6371–6377. PubMed PMC
Sharma J, et al. Primary structure characterization of the photosystem II D1 and D2 subunits. J Biol Chem. 1997;272(52):33158–33166. PubMed
Frankel LK, Sallans L, Limbach PA, Bricker TM. Oxidized amino acid residues in the vicinity of Q(A) and Pheo(D1) of the photosystem II reaction center: Putative generation sites of reducing-side reactive oxygen species. PLoS One. 2013;8(2):e58042. PubMed PMC
Zavafer A, Cheah MH, Hillier W, Chow WS, Takahashi S. Photodamage to the oxygen evolving complex of photosystem II by visible light. Sci Rep. 2015;5:16363. PubMed PMC
Zhang H, et al. Detection of superoxide anion using an isotopically labeled nitrone spin trap: Potential biological applications. FEBS Lett. 2000;473(1):58–62. PubMed
Pou S, et al. A kinetic approach to the selection of a sensitive spin trapping system for the detection of hydroxyl radical. Anal Biochem. 1994;217(1):76–83. PubMed
Stadtman ER, Berlett BS. Fenton chemistry. Amino acid oxidation. J Biol Chem. 1991;266(26):17201–17211. PubMed
Dean RT, Fu S, Stocker R, Davies MJ. Biochemistry and pathology of radical-mediated protein oxidation. Biochem J. 1997;324(Pt 1):1–18. PubMed PMC
Mason RP. Using anti-5,5-dimethyl-1-pyrroline N-oxide (anti-DMPO) to detect protein radicals in time and space with immuno-spin trapping. Free Radic Biol Med. 2004;36(10):1214–1223. PubMed
Levine RL, et al. Determination of carbonyl content in oxidatively modified proteins. Methods Enzymol. 1990;186:464–478. PubMed
Miyao M, Ikeuchi M, Yamamoto N, Ono T. Specific degradation of the D1 protein of photosystem II by treatment with hydrogen peroxide in darkness: Implications for the mechanism of degradation of the D1 protein under illumination. Biochemistry. 1995;34:10019–10026. PubMed
De Las Rivas J, Andersson B, Barber J. Two sites of primary degradation of the D1-protein induced by acceptor or donor side photo-inhibition in photosystem II core complexes. FEBS Lett. 1992;301(3):246–252. PubMed
Mizusawa N, Yamamoto N, Murata N. Characterization of damage to the D 1 protein of photosystem II under photoinhibitory illumination in non-phosphorylated and phosphorylated thylakoid membranes. J Photochem Photobiol B. 1999;48:97–103.
Lupínková L, Komenda J. Oxidative modifications of the Photosystem II D1 protein by reactive oxygen species: From isolated protein to cyanobacterial cells. Photochem Photobiol. 2004;79(2):152–162. PubMed
Bricker TM, Mummadisetti MP, Frankel LK. Recent advances in the use of mass spectrometry to examine structure/function relationships in photosystem II. J Photochem Photobiol B. 2015;152(Pt B):227–246. PubMed
Frankel LK, et al. Radiolytic mapping of solvent-contact surfaces in Photosystem II of higher plants: Experimental identification of putative water channels within the photosystem. J Biol Chem. 2013;288(32):23565–23572. PubMed PMC
Arató A, Bondarava N, Krieger-Liszkay A. Production of reactive oxygen species in chloride- and calcium-depleted photosystem II and their involvement in photoinhibition. Biochim Biophys Acta. 2004;1608(2-3):171–180. PubMed
Semin BK, et al. Production of reactive oxygen species in decoupled, Ca(2+)-depleted PSII and their use in assigning a function to chloride on both sides of PSII. Photosynth Res. 2013;117(1-3):385–399. PubMed
Yadav DK, Pospíšil P. Role of chloride ion in hydroxyl radical production in photosystem II under heat stress: Electron paramagnetic resonance spin-trapping study. J Bioenerg Biomembr. 2012;44(3):365–372. PubMed
Mavankal G, McCain DC, Bricker TM. Effects of chloride on paramagnetic coupling of manganese in calcium chloride-washed Photosystem II preparations. FEBS Lett. 1986;202:235–239.
Kawakami K, Umena Y, Kamiya N, Shen J-R. Location of chloride and its possible functions in oxygen-evolving photosystem II revealed by X-ray crystallography. Proc Natl Acad Sci USA. 2009;106(21):8567–8572. PubMed PMC
Wincencjusz H, van Gorkom HJ, Yocum CF. The photosynthetic oxygen evolving complex requires chloride for its redox state S2––>S3 and S3––>S0 transitions but not for S0––>S1 or S1––>S2 transitions. Biochemistry. 1997;36(12):3663–3670. PubMed
Wincencjusz H, Yocum CF, van Gorkom HJ. Activating anions that replace Cl- in the O2-evolving complex of photosystem II slow the kinetics of the terminal step in water oxidation and destabilize the S2 and S3 states. Biochemistry. 1999;38(12):3719–3725. PubMed
Najafpour MM, et al. Manganese compounds as water-oxidizing catalysts: From the natural water-oxidizing complex to nanosized manganese oxide Ssructures. Chem Rev. 2016;116(5):2886–2936. PubMed
Berthold DA, Babcock GT, Yocum CF. A highly resolved oxygen-evolving Photosystem II preparation from spinach thylakoid membranes. FEBS Lett. 1981;134:231–234.
Ford RC, Evans MCW. Isolation of a Photosystem 2 preparation from higher plants with highly enriched oxygen evolution activity. FEBS Lett. 1983;160:159–164.
Ghanotakis DF, Babcock GT. Hydroxylamine as an inhibitor between Z and P680 in Photosystem II. FEBS Lett. 1983;153:231–234.
Schägger H. Tricine-SDS-PAGE. Nat Protoc. 2006;1(1):16–22. PubMed
Rabilloud T, Vincon M, Garin J. Micropreparative one- and two-dimensional electrophoresis: Improvement with new photopolymerization systems. Electrophoresis. 1995;16(8):1414–1422. PubMed
Sun G, Anderson VE. Prevention of artifactual protein oxidation generated during sodium dodecyl sulfate-gel electrophoresis. Electrophoresis. 2004;25(7-8):959–965. PubMed
Xu H, Freitas MA. A mass accuracy sensitive probability based scoring algorithm for database searching of tandem mass spectrometry data. BMC Bioinformatics. 2007;8:133–137. PubMed PMC
Xu H, Freitas MA. MassMatrix: A database search program for rapid characterization of proteins and peptides from tandem mass spectrometry data. Proteomics. 2009;9(6):1548–1555. PubMed PMC
Xu G, Chance MR. Radiolytic modification and reactivity of amino acid residues serving as structural probes for protein footprinting. Anal Chem. 2005;77(14):4549–4555. PubMed
Kiselar JG, Chance MR. Future directions of structural mass spectrometry using hydroxyl radical footprinting. J Mass Spectrom. 2010;45(12):1373–1382. PubMed PMC
DeLano WL. The PyMOL Molecular Graphics System. Schrödinger; New York: 2002.
The biogenesis and maintenance of PSII: Recent advances and current challenges
From leaf to multiscale models of photosynthesis: applications and challenges for crop improvement
Effects of abiotic stress on photosystem II proteins
Reactive oxygen species in photosystem II: relevance for oxidative signaling
Light quality, oxygenic photosynthesis and more
Tocopherol controls D1 amino acid oxidation by oxygen radicals in Photosystem II