The Formation of Sex Chromosomes in Silene latifolia and S. dioica Was Accompanied by Multiple Chromosomal Rearrangements
Status PubMed-not-MEDLINE Jazyk angličtina Země Švýcarsko Médium electronic-ecollection
Typ dokumentu časopisecké články
PubMed
32180787
PubMed Central
PMC7059608
DOI
10.3389/fpls.2020.00205
Knihovny.cz E-zdroje
- Klíčová slova
- Silene, Y chromosome, chromosome painting, double-translocation, pseudo-autosomal region,
- Publikační typ
- časopisecké články MeSH
The genus Silene includes a plethora of dioecious and gynodioecious species. Two species, Silene latifolia (white campion) and Silene dioica (red campion), are dioecious plants, having heteromorphic sex chromosomes with an XX/XY sex determination system. The X and Y chromosomes differ mainly in size, DNA content and posttranslational histone modifications. Although it is generally assumed that the sex chromosomes evolved from a single pair of autosomes, it is difficult to distinguish the ancestral pair of chromosomes in related gynodioecious and hermaphroditic plants. We designed an oligo painting probe enriched for X-linked scaffolds from currently available genomic data and used this probe on metaphase chromosomes of S. latifolia (2n = 24, XY), S. dioica (2n = 24, XY), and two gynodioecious species, S. vulgaris (2n = 24) and S. maritima (2n = 24). The X chromosome-specific oligo probe produces a signal specifically on the X and Y chromosomes in S. latifolia and S. dioica, mainly in the subtelomeric regions. Surprisingly, in S. vulgaris and S. maritima, the probe hybridized to three pairs of autosomes labeling their p-arms. This distribution suggests that sex chromosome evolution was accompanied by extensive chromosomal rearrangements in studied dioecious plants.
Zobrazit více v PubMed
Bachtrog D. (2006). A dynamic view of sex chromosome evolution. PubMed DOI
Bachtrog D., Jensen J. D., Zhang Z. (2009). Accelerated adaptive evolution on a newly formed X chromosome. PubMed DOI PMC
Bačovský V., Hobza R., Vyskot B. (2018). Technical review: cytogenetic tools for studying mitotic. PubMed DOI
Bačovský V., Houben A., Kumke K., Hobza R. (2019). The distribution of epigenetic histone marks differs between the X and Y chromosomes in PubMed DOI
Bergero R., Charlesworth D. (2009). The evolution of restricted recombination in sex chromosomes. PubMed DOI
Bergero R., Charlesworth D. (2011). Preservation of the Y Transcriptome in a 10-Million-year-old plant sex chromosome system. PubMed DOI
Bergero R., Charlesworth D., Filatov D. A., Moore R. C. (2008a). Defining regions and rearrangements of the PubMed DOI PMC
Bergero R., Forrest A., Charlesworth D. (2008b). Active miniature transposons from a plant genome and its nonrecombining Y chromosome. PubMed DOI PMC
Bergero R., Qiu S., Forrest A., Borthwick H., Charlesworth D. (2013). Expansion of the pseudo-autosomal region and ongoing recombination suppression in the PubMed DOI PMC
Bernasconi G., Antonovics J., Biere A., Charlesworth D., Delph L. F., Filatov D., et al. (2009). Silene as a model system in ecology and evolution. PubMed DOI
Braz G. T., He L., Zhao H., Zhang T., Semrau K., Rouillard J.-M., et al. (2018). Comparative oligo-FISH mapping: an efficient and powerful methodology to reveal karyotypic and chromosomal evolution. PubMed DOI PMC
Campos J. L., Qiu S., Guirao-Rico S., Bergero R., Charlesworth D. (2017). Recombination changes at the boundaries of fully and partially sex-linked regions between closely related Silene species pairs. PubMed DOI PMC
Cermak T., Kubat Z., Hobza R., Koblizkova A., Widmer A., Macas J., et al. (2008). Survey of repetitive sequences in PubMed DOI
Charlesworth D. (2016). Plant sex chromosomes. PubMed DOI
Charlesworth D., Charlesworth B. (2005). Sex chromosomes: evolution of the weird and wonderful. PubMed DOI
Charlesworth D., Laporte V. (1998). The male-sterility polymorphism of Silene vulgaris: analysis of genetic dat from two populations and comparison with Thymus vulgaris. PubMed PMC
Cui C., Shu W., Li P. (2016). Fluorescence in situ hybridization: cell-based genetic diagnostic and research applications. PubMed DOI PMC
Darolti I., Wright A. E., Sandkam B. A., Morris J., Bloch N. I., Farré M., et al. (2019). Extreme heterogeneity in sex chromosome differentiation and dosage compensation in livebearers. PubMed DOI PMC
Figueroa D. M., Bass H. W. (2010). A historical andmodern perspective on plant cytogenetics. PubMed DOI
Filatov D. A. (2005). Evolutionary history of PubMed DOI PMC
Filatov D. A., Howell E. C., Groutides C., Armstrong S. J. (2009). Recent spread of a retrotransposon in the PubMed DOI PMC
Grabowska-Joachimiak A., Kula A., Książczyk T., Chojnicka J., Sliwinska E., Joachimiak A. J. (2015). Chromosome landmarks and autosome-sex chromosome translocations in PubMed DOI PMC
Han Y., Zhang T., Thammapichai P., Weng Y., Jiang J. (2015). Chromosome-specific painting in PubMed DOI PMC
He L., Braz G. T., Torres G. A., Jiang J. (2018). Chromosome painting in meiosis reveals pairing of specific chromosomes in polyploid PubMed DOI
Hobza R., Hudzieczek V., Kubat Z., Cegan R., Vyskot B., Kejnovsky E., et al. (2018). Sex and the flower – developmental aspects of sex chromosome evolution. PubMed DOI PMC
Hobza R., Kejnovsky E., Vyskot B., Widmer A. (2007). The role of chromosomal rearrangements in the evolution of PubMed DOI
Hobza R., Lengerova M., Cernohorska H., Rubes J., Vyskot B. (2004). FAST-FISH with laser beam microdissected DOP-PCR probe distinguishes the sex chromosomes of PubMed DOI
Hobza R., Vyskot B. (2007). Laser microdissection-based analysis of plant sex chromosomes. PubMed DOI
Huber D., Voith von Voithenberg L., Kaigala G. V. (2018). Fluorescence in situ hybridization (FISH): history, limitations and what to expect from micro-scale FISH? DOI
Hughes J. F., Skaletsky H., Pyntikova T., Graves T. A., van Daalen S. K. M., Minx P. J., et al. (2010). Chimpanzee and human Y chromosomes are remarkably divergent in structure and gene content. PubMed DOI PMC
Hurel A., Phillips D., Vrielynck N., Mézard C., Grelon M., Christophorou N. (2018). A cytological approach to studying meiotic recombination and chromosome dynamics in Arabidopsis thaliana male meiocytes in three dimensions. PubMed DOI
Jiang J. (2019). Fluorescence in situ hybridization in plants: recent developments and future applications. PubMed DOI
Kazama Y., Ishii K., Aonuma W., Ikeda T., Kawamoto H., Koizumi A., et al. (2016). A new physical mapping approach refines the sex-determining gene positions on the PubMed DOI PMC
Kejnovsky E., Hobza R., Cermak T., Kubat Z., Vyskot B. (2009). The role of repetitive DNA in structure and evolution of sex chromosomes in plants. PubMed DOI
Kejnovský E., Michalovova M., Steflova P., Kejnovska I., Manzano S., Hobza R., et al. (2013). Expansion of microsatellites on evolutionary young Y chromosome. PubMed DOI PMC
Krasovec M., Chester M., Ridout K., Filatov D. A. (2018). The mutation rate and the age of the sex chromosomes in PubMed DOI
Kubat Z., Zluvova J., Vogel I., Kovacova V., Cermak T., Cegan R., et al. (2014). Possible mechanisms responsible for absence of a retrotransposon family on a plant Y chromosome. PubMed DOI
Lengerova M., Kejnovsky E., Hobza R., Macas J., Grant S. R., Vyskot B. (2004). Multicolor FISH mapping of the dioecious model plant, PubMed DOI
Mathur J., Griffiths S., Barton K., Schattat M. H. (2012). Chapter eight - green-to-red photoconvertible meosfp-aided live imaging in plants. PubMed DOI
Ming R., Wang J., Moore P. H., Paterson A. H. (2007). Sex chromosomes in flowering plants. PubMed DOI
Muyle A., Shearn R., Marais G. A. B. (2017). The evolution of sex chromosomes and dosage compensation in plants. PubMed DOI PMC
Pan W. H., Houben A., Schlegel R. (1993). Highly effective cell synchronization in plant roots by hydroxyurea and amiprophos-methyl or colchicine. PubMed DOI
Papadopulos A. S. T., Chester M., Ridout K., Filatov D. A. (2015). Rapid Y degeneration and dosage compensation in plant sex chromosomes. PubMed DOI PMC
Rodríguez Lorenzo J. L., Hobza R., Vyskot B. (2018). DNA methylation and genetic degeneration of the Y chromosome in the dioecious plant PubMed DOI PMC
Runyeon H., Prentice H. C. (1997). Genetic differentiation in the Bladder campions, DOI
Schubert V., Ruban A., Houben A. (2016). Chromatin ring formation at plant centromeres. PubMed DOI PMC
Šimoníková D., Němečková A., Karafiátová M., Uwimana B., Swennen R., Doležel J., et al. (2019). Chromosome painting facilitates anchoring reference genome sequence to chromosomes in situ and integrated karyotyping in banana (Musa Spp.). PubMed DOI PMC
Široký J., Lysák M. A., Doležel J., Kejnovský E., Vyskot B. (2001). Heterogeneity of rDNA distribution and genome size in PubMed DOI
Stone J. D., Koloušková P., Sloan D. B., Štorchová H. (2017). Non-coding RNA may be associated with cytoplasmic male sterility in PubMed DOI PMC
Tang S., Tang Z., Qiu L., Yang Z., Li G., Lang T., et al. (2018). Developing new oligo probes to distinguish specific chromosomal segments and the A, B, D genomes of wheat ( PubMed DOI PMC
Uchida W., Matsunaga S., Sugiyama R., Shibata F., Kazama Y., Miyazawa Y., et al. (2002). Distribution of interstitial telomere-like repeats and their adjacent sequences in a dioecious plant, PubMed DOI
Vyskot B., Hobza R. (2015). The genomics of plant sex chromosomes. PubMed DOI
Xin H., Zhang T., Han Y., Wu Y., Shi J., Xi M., et al. (2018). Chromosome painting and comparative physical mapping of the sex chromosomes in PubMed DOI
Yoshida K., Makino T., Yamaguchi K., Shigenobu S., Hasebe M., Kawata M., et al. (2014). Sex chromosome turnover contributes to genomic divergence between incipient stickleback species. PubMed DOI PMC
Zluvova J., Georgiev S., Janousek B., Charlesworth D., Vyskot B., Negrutiu I. (2007). Early events in the evolution of the PubMed DOI PMC
Zluvova J., Janousek B., Negrutiu I., Vyskot B. (2005). Comparison of the X and Y chromosome organization in PubMed DOI PMC
Dynamic patterns of repeats and retrotransposons in the centromeres of Humulus lupulus L
The Silene latifolia genome and its giant Y chromosome
Sexy ways: approaches to studying plant sex chromosomes
The evolution of huge Y chromosomes in Coccinia grandis and its sister, Coccinia schimperi
Dosage compensation evolution in plants: theories, controversies and mechanisms
Advances in the Molecular Cytogenetics of Bananas, Family Musaceae