In this chapter, we describe a pipeline for the nuclear genome analysis of kinetoplastids. Our approach relies on a combination of short- and long-sequencing reads and can be universally applied to studies of other kinetoplastids' genomes.

Department of Parasitology Faculty of Science Charles University BIOCEV Vestec Czechia

Division of Infectious Diseases Department of Medicine Faculty of Medicine and Dentistry University of Alberta Edmonton Canada

Institute of Parasitology Biology Centre Czech Academy of Sciences České Budějovice Czechia

Life Science Research Centre Faculty of Science University of Ostrava Ostrava Czechia

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