Determining why convergent traits use distinct versus shared genetic components is crucial for understanding how evolutionary processes generate and sustain biodiversity. However, the factors dictating the genetic underpinnings of convergent traits remain incompletely understood. Here, we use heterologous protein expression, biochemical assays, and phylogenetic analyses to confirm the origin of a luciferase gene from haloalkane dehalogenases in the brittle star Amphiura filiformis. Through database searches and gene tree analyses, we also show a complex pattern of the presence and absence of haloalkane dehalogenases across organismal genomes. These results first confirm parallel evolution across a vast phylogenetic distance, because octocorals like Renilla also use luciferase derived from haloalkane dehalogenases. This parallel evolution is surprising, even though previously hypothesized, because many organisms that also use coelenterazine as the bioluminescence substrate evolved completely distinct luciferases. The inability to detect haloalkane dehalogenases in the genomes of several bioluminescent groups suggests that the distribution of this gene family influences its recruitment as a luciferase. Together, our findings highlight how biochemical function and genomic availability help determine whether distinct or shared genetic components are used during the convergent evolution of traits like bioluminescence.

• Klíčová slova
• bioluminescence, convergent evolution, haloalkane dehalogenase, luciferase, parallel evolution,
• MeSH
• fylogeneze MeSH
• hydrolasy * genetika   metabolismus   MeSH
• luciferasy * genetika   metabolismus   MeSH
• molekulární evoluce * MeSH
• zvířata MeSH
• Check Tag
• zvířata MeSH
• Publikační typ
• časopisecké články MeSH
• Názvy látek
• haloalkane dehalogenase MeSH Prohlížeč
• hydrolasy * MeSH
• luciferasy * MeSH

Poales are one of the most species-rich, ecologically and economically important orders of plants and often characterise open habitats, enabled by unique suites of traits. We test six hypotheses regarding the evolution and assembly of Poales in open and closed habitats throughout the world, and examine whether diversification patterns demonstrate parallel evolution. We sampled 42% of Poales species and obtained taxonomic and biogeographic data from the World Checklist of Vascular Plants database, which was combined with open/closed habitat data scored by taxonomic experts. A dated supertree of Poales was constructed. We integrated spatial phylogenetics with regionalisation analyses, historical biogeography and ancestral state estimations. Diversification in Poales and assembly of open and closed habitats result from dynamic evolutionary processes that vary across lineages, time and space, most prominently in tropical and southern latitudes. Our results reveal parallel and recurrent patterns of habitat and trait transitions in the species-rich families Poaceae and Cyperaceae. Smaller families display unique and often divergent evolutionary trajectories. The Poales have achieved global dominance via parallel evolution in open habitats, with notable, spatially and phylogenetically restricted divergences into strictly closed habitats.

• Klíčová slova
• biogeography, evolution, evolutionary transitions, grasslands, grass‐like plants, savannas, spatial phylogenetics,
• MeSH
• biologická evoluce MeSH
• ekosystém * MeSH
• fylogeneze MeSH
• lipnicovité * MeSH
• Publikační typ
• časopisecké články MeSH

Parallel evolution provides powerful natural experiments for studying repeatability of evolution and genomic basis of adaptation. Well-documented examples from plants are, however, still rare, as are inquiries of mechanisms driving convergence in some traits while divergence in others. Arabidopsis arenosa, a predominantly foothill species with scattered morphologically distinct alpine occurrences is a promising candidate. Yet, the hypothesis of parallelism remained untested. We sampled foothill and alpine populations in all regions known to harbor the alpine ecotype and used SNP genotyping to test for repeated alpine colonization. Then, we combined field surveys and a common garden experiment to quantify phenotypic parallelism. Genetic clustering by region but not elevation and coalescent simulations demonstrated parallel origin of alpine ecotype in four mountain regions. Alpine populations exhibited parallelism in height and floral traits which persisted after two generations in cultivation. In contrast, leaf traits were distinctive only in certain region(s), reflecting a mixture of plasticity and genetically determined non-parallelism. We demonstrate varying degrees and causes of parallelism and non-parallelism across populations and traits within a plant species. Parallel divergence along a sharp elevation gradient makes A. arenosa a promising candidate for studying genomic basis of adaptation.

• Klíčová slova
• Arabidopsis, adaptation, alpine environments, convergence, parallel evolution, phenotypic parallelism,
• Publikační typ
• časopisecké články MeSH

Parallel evolution is common in nature and provides one of the most compelling examples of rapid environmental adaptation. In contrast to the recent burst of studies addressing genomic basis of parallel evolution, integrative studies linking genomic and phenotypic parallelism are scarce. Edaphic islands of toxic serpentine soils provide ideal systems for studying rapid parallel adaptation in plants, imposing strong, spatially replicated selection on recently diverged populations. We leveraged threefold independent serpentine adaptation of Arabidopsis arenosa and combined reciprocal transplants, ion uptake phenotyping, and available genome-wide polymorphisms to test if parallelism is manifested to a similar extent at both genomic and phenotypic levels. We found pervasive phenotypic parallelism in functional traits yet with varying magnitude of fitness differences that was congruent with neutral genetic differentiation between populations. Limited costs of serpentine adaptation suggest absence of soil-driven trade-offs. On the other hand, the genomic parallelism at the gene level was significant, although relatively minor. Therefore, the similarly modified phenotypes, for example, of ion uptake arose possibly by selection on different loci in similar functional pathways. In summary, we bring evidence for the important role of genetic redundancy in rapid adaptation involving traits with polygenic architecture.

• Klíčová slova
• Adaptation, Arabidopsis, genetic redundancy, natural selection, parallel evolution, reciprocal transplant,
• MeSH
• Arabidopsis * genetika   MeSH
• fenotyp MeSH
• fyziologická adaptace genetika   MeSH
• genomika MeSH
• půda MeSH
• Publikační typ
• časopisecké články MeSH
• práce podpořená grantem MeSH
• Názvy látek
• půda MeSH

After the break-up of Gondwana dispersal of organisms between America, Australia and Africa became more complicated. One of the possible remaining paths led through Antarctica, that was not yet glaciated and it remained habitable for many organisms. This favourable climate made Antarctica an important migration corridor for organisms with good dispersal ability, such as Aculeata (Hymenoptera), till the Oligocene cooling. Here we tested how cooling of Antarctica impacted global dispersal of Aculeata parasites (Strepsiptera: Xenidae). Our data set comprising six nuclear genes from a broad sample of Xenidae. Bayesian dating was used to estimate divergence times in phylogenetic reconstruction. Biogeography was investigated using event-based analytical methods: likelihood-based dispersal-extinction-cladogenesis and Bayesian models. The Bayesian model was used for reconstruction of ancestral host groups. Biogeographical methods indicate that multiple lineages were exchanged between the New World and the Old World + Australia until the Antarctica became completely frozen over. During the late Paleogene and Neogene periods, several lineages spread from the Afrotropics to other Old World regions and Australia. The original hosts of Xenidae were most likely social wasps. Within one lineage of solitary wasp parasites, parallel switch to digger wasps (Sphecidae) occurred independently in the New World and Old World regions. The biogeography and macroevolutionary history of Xenidae can be explained by the combination of dispersal, lineage extinction and climatic changes during the Cenozoic era. A habitable Antarctica and the presence of now-submerged islands and plateaus that acted as a connection between the New World and Old World + Australia provided the possibility for biotic exchanges of parasites along with their hymenopteran hosts. Although Xenidae are generally host specialists, there were significant host switches to unrelated but ecologically similar hosts during their evolution. There is little or no evidence for cophylogeny between strepsipteran parasites and hymenopteran lineages.

• Klíčová slova
• Antarctica, Historical biogeography, Host specialization, Palaeoclimatology, Parasites, Xenidae,
• MeSH
• Bayesova věta MeSH
• biologická evoluce * MeSH
• fylogeneze MeSH
• fylogeografie MeSH
• interakce hostitele a parazita * MeSH
• paraziti fyziologie   MeSH
• pravděpodobnostní funkce MeSH
• vznik druhů (genetika) MeSH
• zvířata MeSH
• Check Tag
• zvířata MeSH
• Publikační typ
• časopisecké články MeSH
• práce podpořená grantem MeSH
• Geografické názvy
• Antarktida MeSH

Parallel adaptive radiations have arisen following the colonization of islands by lizards and lakes by fishes. In these classic examples, parallel adaptive radiation is a response to the ecological opportunities afforded by the colonization of novel ecosystems and similar adaptive landscapes that favour the evolution of similar suites of ecomorphs, despite independent evolutionary histories. Here, we demonstrate that parallel adaptive radiations of cichlid fishes arose in South American rivers. Speciation-assembled communities of pike cichlids (Crenicichla) have independently diversified into similar suites of novel ecomorphs in the Uruguay and Paraná Rivers, including crevice feeders, periphyton grazers and molluscivores. There were bursts in phenotypic evolution associated with the colonization of each river and the subsequent expansion of morphospace following the evolution of the ecomorphs. These riverine clades demonstrate that characteristics emblematic of textbook parallel adaptive radiations of island- and lake-dwelling assemblages are feasible evolutionary outcomes even in labile ecosystems such as rivers.

• Klíčová slova
• Crenicichla, cichlid, convergence, diversification, parallel evolution, species flock,
• MeSH
• biologická adaptace genetika   MeSH
• biologická evoluce * MeSH
• cichlidy anatomie a histologie   genetika   MeSH
• ekosystém MeSH
• fenotyp MeSH
• fylogeneze MeSH
• jednonukleotidový polymorfismus genetika   MeSH
• jezera MeSH
• ostrovy MeSH
• řeky * MeSH
• sekvenování celého genomu MeSH
• zvířata MeSH
• Check Tag
• zvířata MeSH
• Publikační typ
• časopisecké články MeSH
• práce podpořená grantem MeSH
• Research Support, U.S. Gov't, Non-P.H.S. MeSH
• Geografické názvy
• ostrovy MeSH
• Uruguay MeSH

Urbanization and its urban-heat-island effect (UHI) have expanding footprints worldwide. The UHI means that urban habitats experience a higher mean and more frequent extreme high temperatures than rural habitats, impacting the ontogeny and resilience of urban biodiversity. However, many organisms occupy different microhabitats during different life stages and thus may experience the UHI differently across their development. While evolutionary changes in heat tolerance in line with the UHI have been demonstrated, it is unknown whether such evolutionary responses can vary across development. Here, using common-garden-reared Chiasmia clathrata moths from urban and rural populations from three European countries, we tested for urban evolution of heat shock tolerance in two life stages: larvae and adults. Our results indicate widespread urban evolution of increased heat tolerance in the adult stage only, suggesting that the UHI may be a stronger selective agent in adults. We also found that the difference in heat tolerance between urban and rural populations was similar to the difference between Mid- and North-European regions, suggesting similarity between adaptation to the UHI and natural, latitudinal temperature variation. Our observations incentivize further research to quantify the impact of these UHI adaptations on fitness during urbanization and climate change, and to check whether life-stage-specific adaptations in heat tolerance are typical of other ectothermic species that manage to survive in urbanized settings.

• Klíčová slova
• heat knock‐down time (HKDT), heat tolerance, latitudinal variation, lepidoptera, urban evolution, urban‐heat‐island effect (UHI),
• Publikační typ
• časopisecké články MeSH

Dexoris chome sp. nov. is described from South Pare mountains, Tanzania, based on a male specimen. This is the only Dexoris with shortened elytra, rudimentary hind wings and large, larviform abdomen. Unlike males of other species in the genus, D. chome sp. nov. has a modified number of palpomeres and remarkably short, robust legs and antennae. Such modifications are similar to those in the neotenic female of Omalisus fontisbellaquei Fourcroy, 1785 (Omalisidae), suggesting analogous morphological changes in unrelated lineages supposedly caused by similar modifications of their metamorphosis. The distribution of all 11 known species of African Dexoris closely overlap with the location of the hypothesized centres for evolution of new species in the Afrotropical region.

• MeSH
• anatomické struktury zvířat anatomie a histologie   růst a vývoj   MeSH
• biologická evoluce MeSH
• brouci anatomie a histologie   klasifikace   růst a vývoj   MeSH
• rozšíření zvířat MeSH
• velikost těla MeSH
• zvířata MeSH
• Check Tag
• mužské pohlaví MeSH
• ženské pohlaví MeSH
• zvířata MeSH
• Publikační typ
• časopisecké články MeSH
• práce podpořená grantem MeSH

Functional and structural adjustments of plants in response to environmental factors, including those occurring in alpine habitats, can result in transient acclimation, plastic phenotypic adjustments and/or heritable adaptation. To unravel repeatedly selected traits with potential adaptive advantage, we studied parallel (ecotypic) and non-parallel (regional) differentiation in leaf traits in alpine and foothill ecotypes of Arabidopsis arenosa. Leaves of plants from eight alpine and eight foothill populations, representing three independent alpine colonization events in different mountain ranges, were investigated by microscopy techniques after reciprocal transplantation. Most traits clearly differed between the foothill and the alpine ecotype, with plastic adjustments to the local environment. In alpine populations, leaves were thicker, with altered proportions of palisade and spongy parenchyma, and had fewer trichomes, and chloroplasts contained large starch grains with less stacked grana thylakoids compared to foothill populations. Geographical origin had no impact on most traits except for trichome and stomatal density on abaxial leaf surfaces. The strong parallel, heritable ecotypic differentiation in various leaf traits and the absence of regional effects suggests that most of the observed leaf traits are adaptive. These trait shifts may reflect general trends in the adaptation of leaf anatomy associated with the colonization of alpine habitats.

• Klíčová slova
• adaptation, alpine environment, ecotype, leaf anatomy, parallel evolution,
• Publikační typ
• časopisecké články MeSH

Parallel adaptation provides valuable insight into the predictability of evolutionary change through replicated natural experiments. A steadily increasing number of studies have demonstrated genomic parallelism, yet the magnitude of this parallelism varies depending on whether populations, species, or genera are compared. This led us to hypothesize that the magnitude of genomic parallelism scales with genetic divergence between lineages, but whether this is the case and the underlying evolutionary processes remain unknown. Here, we resequenced seven parallel lineages of two Arabidopsis species, which repeatedly adapted to challenging alpine environments. By combining genome-wide divergence scans with model-based approaches, we detected a suite of 151 genes that show parallel signatures of positive selection associated with alpine colonization, involved in response to cold, high radiation, short season, herbivores, and pathogens. We complemented these parallel candidates with published gene lists from five additional alpine Brassicaceae and tested our hypothesis on a broad scale spanning ∼0.02 to 18 My of divergence. Indeed, we found quantitatively variable genomic parallelism whose extent significantly decreased with increasing divergence between the compared lineages. We further modeled parallel evolution over the Arabidopsis candidate genes and showed that a decreasing probability of repeated selection on the same standing or introgressed alleles drives the observed pattern of divergence-dependent parallelism. We therefore conclude that genetic divergence between populations, species, and genera, affecting the pool of shared variants, is an important factor in the predictability of genome evolution.

• Klíčová slova
• Arabidopsis, alpine adaptation, evolution, genomics, parallelism,
• MeSH
• anotace sekvence MeSH
• Arabidopsis klasifikace   genetika   metabolismus   účinky záření   MeSH
• biologická evoluce * MeSH
• býložravci fyziologie   MeSH
• fyziologická adaptace genetika   MeSH
• fyziologický stres MeSH
• genetická variace * MeSH
• genetický drift MeSH
• genom rostlinný * MeSH
• genová introgrese MeSH
• genová ontologie MeSH
• ionizující záření MeSH
• modely genetické MeSH
• nízká teplota MeSH
• rostlinné proteiny genetika   metabolismus   MeSH
• zvířata MeSH
• Check Tag
• zvířata MeSH
• Publikační typ
• časopisecké články MeSH
• práce podpořená grantem MeSH
• Názvy látek
• rostlinné proteiny MeSH