Exploring the environmental diversity of kinetoplastid flagellates in the high-throughput DNA sequencing era

. 2015 Dec ; 110 (8) : 956-65. [epub] 20151124

Jazyk angličtina Země Brazílie Médium print-electronic

Typ dokumentu časopisecké články, práce podpořená grantem, přehledy

Perzistentní odkaz   https://www.medvik.cz/link/pmid26602872
Odkazy

PubMed 26602872
PubMed Central PMC4708014
DOI 10.1590/0074-02760150253
PII: S0074-02762015005025103
Knihovny.cz E-zdroje

The class Kinetoplastea encompasses both free-living and parasitic species from a wide range of hosts. Several representatives of this group are responsible for severe human diseases and for economic losses in agriculture and livestock. While this group encompasses over 30 genera, most of the available information has been derived from the vertebrate pathogenic genera Leishmaniaand Trypanosoma. Recent studies of the previously neglected groups of Kinetoplastea indicated that the actual diversity is much higher than previously thought. This article discusses the known segment of kinetoplastid diversity and how gene-directed Sanger sequencing and next-generation sequencing methods can help to deepen our knowledge of these interesting protists.

Zobrazit více v PubMed

Adl SM, Simpson AG, Lane CE, Lukeš J, Bass D, Bowser SS, Brown MW, Burki F, Dunthorn M, Hampl V, Heiss A, Hoppenrath M, Lara E, Le Gall L, Lynn DH, McManus H, Mitchell EA, Mozley-Stanridge SE, Parfrey LW, Pawlowski J, Rueckert S, Shadwick RS, Schoch CL, Smirnov A, Spiegel FW. The revised classification of eukaryotes. J Eukaryot Microbiol. 2012;59:429–493. PubMed PMC

Atkins MS, Teske AP, Anderson OR. A survey of flagellate diversity at four deep-sea hydrothermal vents in the eastern Pacific Ocean using structural and molecular approaches. J Eukaryot Microbiol. 2000;47:400–411. PubMed

Aufderheide AC, Salo W, Madden M, Streitz J, Buikstra J, Guhl F, Arriaza B, Renier C, Wittmers LE, Jr, Fornaciari G, Allison M. A 9,000-year record of Chagas disease. Proc Natl Acad Sci USA. 2004;101:2034–2039. PubMed PMC

Aylagas E, Borja A, Rodríguez-Ezpeleta N. Environmental status assessment using DNA metabarcoding: towards a genetics based marine biotic index (gAMBI) PLoS ONE. 2014;9: PubMed PMC

Bachy C, Dolan JR, López-García P, Deschamps P, Moreira D. Accuracy of protist diversity assessments: morphology compared with cloning and direct pyrosequencing of 18S rRNA genes and ITS regions using the conspicuous tintinnid ciliates as a case study. ISME J. 2013;7:244–255. PubMed PMC

Bates ST, Clemente JC, Flores GE, Walters WA, Parfrey LW, Knight R, Fierer N. Global biogeography of highly diverse protistan communities in soil. ISME J. 2013;7:652–659. PubMed PMC

Begerow D, Nilsson H, Unterseher M, Maier W. Current state and perspectives of fungal DNA barcoding and rapid identification procedures. Appl Microbiol Biotechnol. 2010;87:99–108. PubMed

Berney C, Fahrni J, Pawlowski J. How many novel eukaryotic ‘kingdoms’? Pitfalls and limitations of environmental DNA surveys. BMC Biol. 2004;2: PubMed PMC

Berriman M, Ghedin E, Hertz-Fowler C, Blandin G, Renauld H, Bartholomeu DC, Lennard NJ, Caler E, Hamlin NE, Haas B, Böhme U, Hannick L, Aslett MA, Shallom J, Marcello L, Hou L, Wickstead B, Alsmark UC, Arrowsmith C, Atkin RJ, Barron AJ, Bringaud F, Brooks K, Carrington M, Cherevach I, Chillingworth TJ, Churcher C, Clark LN, Corton CH, Cronin A, Davies RM, Doggett J, Djikeng A, Feldblyum T, Field MC, Fraser A, Goodhead I, Hance Z, Harper D, Harris BR, Hauser H, Hostetler J, Ivens A, Jagels K, Johnson D, Johnson J, Jones K, Kerhornou AX, Koo H, Larke N, Landfear S, Larkin C, Leech V, Line A, Lord A, Macleod A, Mooney PJ, Moule S, Martin DM, Morgan GW, Mungall K, Norbertczak H, Ormond D, Pai G, Peacock CS, Peterson J, Quail MA, Rabbinowitsch E, Rajandream MA, Reitter C, Salzberg SL, Sanders M, Schobel S, Sharp S, Simmonds M, Simpson AJ, Tallon L, Turner CM, Tait A, Tivey AR, Van Aken S, Walker D, Wanless D, Wang S, White B, White O, Whitehead S, Woodward J, Wortman J, Adams MD, Embley TM, Gull K, Ullu E, Barry JD, Fairlamb AH, Opperdoes F, Barrell BG, Donelson JE, Hall N, Fraser CM, Melville SE, El-Sayed NM. The genome of the African trypanosome Trypanosoma brucei. Science. 2005;5733:416–422. PubMed

Borghesan TC, Ferreira RC, Takata CS, Campaner M, Borda CC, Paiva F, Milder RV, Teixeira MM, Camargo EP. Molecular phylogenetic redefinition of Herpetomonas (Kinetoplastea, Trypanosomatidae), a genus of insect parasites associated with flies. Protist. 2013;164:129–152. PubMed

Bouchet P, Héros V, Lozouet P, Maestrati P. Héros V, Cowe RH, Bouchet P.eds. Tropical deep-sea Benthos 25. Muséum National d’Histoire Naturelle; Paris: 2008. A quarter-century of deep-sea malacological exploration in the South and West Pacific: where do we stand? How far to go? pp. 9–40.

Brown PB, Wolfe GV. Protist genetic diversity in the acidic hydrothermal environments of Lassen Volcanic National Park, USA. J Eukaryot Microbiol. 2006;53:420–431. PubMed

Camargo EP. Phytomonas and other trypanosomatid parasites of plants and fruit. Adv Parasitol. 1999;42:29–112. PubMed

Carnes J, Anupama A, Balmer O, Jackson A, Lewis M, Brown R, Cestari I, Desquesnes M, Gendrin C, Gibson W, Hertz-Fowler C, Imamura H, Ivens A, Jansen A, Kořený L, Lai D-H, MacLeod A, Martin D, McDermott SM, Merritt C, Monnerat S, Moon W, Myler P, Phan I, Ramasamy G, Sivam D, Lun Z-R, Lukeš J, Stuart K, Schnaufer A. Genome and phylogenetic analyses of Trypanosoma evansi reveal extensive similarity to T. brucei and multiple independent origins for dyskinetoplasty. PLoS Negl Trop Dis. 2015;9: PubMed PMC

Cavalier-Smith T. Eukaryote kingdoms: seven or nine? Biosystems. 1981;14:461–481. PubMed

Cavalier-Smith T. Only six kingdoms of life. Proc Biol Sci. 2004;271:1251–1262. PubMed PMC

Chantangsi C, Lynn DH, Brandl MT, Cole JC, Hetrick N, Ikonomi P. Barcoding ciliates: a comprehensive study of 75 isolates of the genus Tetrahymena. Int J Syst Evol Microbiol. 2007;57:2412–2425. PubMed

Croan DG, Morrison DA, Ellis JT. Evolution of the genus Leishmania revealed by comparison of DNA and RNA polymerase gene sequences. Mol Biochem Parasitol. 1997;89:149–159. PubMed

Dawson SC, Fritz-Laylin LK. Sequencing free-living protists: the case for metagenomics. Environ Microbiol. 2009;7:1627–1631. PubMed

Dawson SC, Pace NR. Novel kingdom-level eukaryotic diversity in anoxic environments. Proc Natl Acad Sci USA. 2002;99:8324–8329. PubMed PMC

de Vargas C, Audic S, Henry N, Decelle J, Mahé F, Logares R, Lara E, Berney C, Le Bescot N, Probert I, Carmichael M, Poulain J, Romac S, Colin S, Aury J-M, Bittner L, Chaffron S, Dunthorn M, Engelen S, Flegontova O, Guidi L, Horák A, Jaillon O, Mendez GL, Lukeš J, Malviya S, Morard R, Mulot M, Scalco E, Siano R, Vincent F, Zingone A, Dimier C, Picheral M, Searson S, Kandels-Lewis S, Acinas SG, Bork P, Bowler C, Gaill F, Gorsky G, Grimsley N, Hingcamp P, Iudicone D, Not F, Ogata H, Pesant S, Raes J, Sieracki M, Speich S, Stemmann L, Sunagawa S, Weissenbach J, Wincker P, Karsenti E. Eukaryotic plankton diversity in the sunlit global ocean. Science. 2015;348: PubMed

Dean S, Sunter J, Wheeler RJ, Hodkinson I, Gluenz E, Gull K. A toolkit enabling efficient, scalable and reproducible gene tagging in trypanosomatids. Open Biol. 2015;5: PubMed PMC

del Campo J, Sieracki ME, Molestina R, Keeling P, Massana R, Ruiz-Trillo I. The others: our biased perspective of eukaryotic genomes. Trends Ecol Evol. 2014;29:252–258. PubMed PMC

Dollet M. Plant diseases caused by flagellate protozoa (Phytomonas) Annu Rev Phytopathol. 1984;22:115–132.

Epp LS, Boessenkool S, Bellemain EP. New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems. Mol Ecol. 2012;21:1821–1833. PubMed

Ferreira JI, da Costa AP, Ramirez D, Roldan JA, Saraiva D, Founier GFS, Sue A, Zambelli ER, Minervino AH, Verdade VK, Gennari SM, Marcili A. Anuran trypanosomes: phylogenetic evidence for new clades in Brazil. Syst Parasitol. 2015;91:63–70. PubMed

Foster JA, Bunge J, Gilbert JA. Measuring the microbiome: perspectives on advances in DNA-based techniques for exploring microbial life. Brief Bioinform. 2012;13:420–429. PubMed PMC

Frías L, Leles D, Araújo A. Studies on protozoa in ancient remains - A Review. Mem Inst Oswaldo Cruz. 2013;108:1–12. PubMed PMC

Gilbert MT, Haselkorn T, Bunce M, Sanchez JJ, Lucas SB, Jewell LD, Van Marck E, Worobey M. The isolation of nucleic acids from fixed, paraffin-embedded tissues-which methods are useful when? PLoS ONE. 2007;2: PubMed PMC

Glaser K, Kuppardt A, Krohn S, Heidtmann A, Harms H, Chatzinotas A. Primer pairs for the specific environmental detection and T-RFLP analysis of the ubiquitous flagellate taxa Chrysophyceae and Kinetoplastea. J Microbiol Methods. 2014;100:8–16. PubMed

Grybchuk-Ieremenko A, Losev A, Kostygov AY, Lukeš J, Yurchenko V. High prevalence of trypanosome co-infections in freshwater fishes. Folia Parasitol. 2014;61:495–504. PubMed

Hamilton PB, Stevens JR, Gaunt MW, Gidley J, Gibson WC. Trypanosomes are monophyletic: evidence from genes for glyceraldehyde phosphate dehydrogenase and small subunit ribosomal RNA. Int J Parasitol. 2004;34:1393–1404. PubMed

Hayes PM, Lawton SP, Smit NJ, Gibson WC, Davies AJ. Morphological and molecular characterization of a marine fish trypanosome from South Africa, including its development in a leech vector. Parasit Vectors. 2014;7: PubMed PMC

Hebert PDN, Cywinska A, Ball SL, de Waard JR. Biological identifications through DNA barcodes. Proc Biol Sci. 2003;270:313–321. PubMed PMC

Hoare CA, Wallace FG. Developmental stages of trypanosomatid flagellates: a new terminology. Nature. 1966;212:1385–1386.

Hollar L, Lukeš J, Maslov DA. Monophyly of endosymbiont containing trypanosomatids: phylogeny versus taxonomy. J Eukaryot Microbiol. 1998;45:293–297. PubMed

Jaskowska E, Butler C, Preston G, Kelly S. Phytomonas: trypanosomatids adapted to plant environment. PLoS Pathogens. 2015;11: PubMed PMC

Kher CP, Doerder FP, Cooper J, Ikonomi P, Achilles-Day U, Küpper FC, Lynn DH. Barcoding Tetrahymena: discriminating species and identifying unknowns using the cytochrome c oxidase subunit I (cox-1) barcode. Protist. 2011;162:2–13. PubMed

Kolísko M, Boscaro V, Burki F, Lynn DH, Keeling PJ. Single-cell transcriptomics for microbial eukaryotes. Curr Biol. 2014;24:R1081–R1082. PubMed

Kostygov A, Frolov AO. Leptomonas jaculum (Leger, 1902) Woodcock 1914: a leptomonas or a blastocrithidia? Parazitologiia. 2007;41:126–136. PubMed

Kostygov AY, Grybchuk-Ieremenko A, Malysheva MN, Frolov AO, Yurchenko V. Molecular revision of the genus Wallaceina. Protist. 2014;165:594–604. PubMed

Lamontagne J, Papadopoulou B. Developmental regulation of spliced leader RNA gene in Leishmania donovani amastigotes is mediated by specific polyadenylation. J Biol Chem. 1999;274:6602–6609. PubMed

Lebonah DE, Dileep A, Chandrasekhar K, Sreevani S, Sreedevi B, Kumari JP. DNA barcoding on bacteria: A Review. Adv Biol. 20142014:1–9.

Lima-Mendez G, Faust K, Henry N, Decelle J, Colin S, Carcillo F, Chaffron S, Ignacio-Espinosa JC, Roux S, Vincent F, Bittner L, Darzi Y, Wang J, Audic S, Berline L, Bontempi G, Cabello AM, Coppola L, Cornejo-Castillo FM, d’Ovidio F, Meester L, Ferrera I, Garet-Delmas M-J, Guidi L, Lara E, Pesant S, Royo-Llonch M, Salazar G, Sánchez P, Sebastian M, Souffreau C, Dimier C, Picheral M, Searson S, Kandels-Lewis S, coordinators Tara Oceans, Gorsky G, Not F, Ogata H, Speich S, Stemmann L, Weissenbach J, Wincker P, Acinas SG, Sunagawa S, Bork P, Sullivan MB, Karsenti E, Bowler C, Vargas C, Raes J. Determinants of community structure in the global plankton interactome. 10.1126/science.1262073.Science. 2015;348 PubMed

López-García P, Philippe H, Gail F, Moreira D. Autochthonous eukaryotic diversity in hydrothermal sediment and experimental microcolonizers at the Mid-Atlantic Ridge. Proc Natl Acad Sci USA. 2003100:697–702. PubMed PMC

López-García P, Rodríguez-Valera F, Pedrós-Alió C, Moreira D. Unexpected diversity of small eukaryotes in deep-sea Antarctic plankton. Nature. 2001;409:603–607. PubMed

Losev A, Grybchuk-Ieremenko A, Kostygov AY, Lukeš J, Yurchenko V. Host specificity, pathogenicity, and mixed infections of trypanoplasms from freshwater fishes. Parasitol Res. 2015;114:1071–1078. PubMed

Lukeš J, Flegontova O, Horák A. Diplonemids. Curr Biol. 2015;25:R1–R3. PubMed

Lukeš J, Guilbride DL, Votýpka J, Zíková A, Benne R, Englund PT. Kinetoplast DNA network: evolution of an improbable structure. Eukaryot Cell. 2002;1:495–502. PubMed PMC

Lukeš J, Jirků M, Doležel D, Král’ová I, Hollar L, Maslov DA. Analysis of ribosomal RNA genes suggests that trypanosomes are monophyletic. J Mol Evol. 1997;44:521–527. PubMed

Lukeš J, Skalický T, Týč J, Votýpka J, Yurchenko V. Evolution of parasitism in kinetoplastid flagellates. Mol Biochem Parasitol. 2014;195:115–122. PubMed

Maslov DA, Lukeš L, Jirku M, Simpson L. Phylogeny of trypanosomes as inferred from the small and large subunit rRNAs: implications for the evolution of parasitism in the trypanosomatid protozoa. Mol Biochem Parasitol. 1996;75:197–205. PubMed

Maslov DA, Westenberger SJ, Xu X, Campbell DA, Sturm NR. Discovery and barcoding by analysis of spliced leader RNA gene sequences of new isolates of Trypanosomatidae from Heteroptera in Costa Rica and Ecuador. J Eukaryot Microbiol. 2007;54:57–65. PubMed

Maslov DA, Yurchenko VY, Jirků M, Lukeš J. Two new species of trypanosomatid parasites isolated from Heteroptera in Costa Rica. J Eukaryot Microbiol. 2010;57:177–188. PubMed

McCarthy CB, Diambra LA, Pomar RVR. Metagenomic analysis of taxa associated with Lutzomyia longipalpis, vector of visceral leishmaniasis using an unbiased high-throughput approach. PLoS Negl Trop Dis. 2011;5: PubMed PMC

McGhee R, Cosgrove WB. Biology and physiology of the lower Trypanosomatidae. Microbiol Rev. 1980;44:140–173. PubMed PMC

Medinger R, Nolte V, Pandey RV, Jost S, Ottenwälder B, Schlötterer C, Boenigk J. Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms. Mol Ecol. 2010;19:32–40. PubMed PMC

Mendoza MLZ, Sicheritz-Pontén T, Gilbert MTP. Environmental genes and genomes: understanding the differences and challenges in the approaches and software for their analyses. Brief Bioinform. 2015;16:745–758. PubMed PMC

Merzlyak E, Yurchenko V, Kolesnikov AA, Alexandrov K, Podlipaev SA, Maslov DA. Diversity and phylogeny of insect trypanosomatids based on small subunit rRNA genes: polyphyly of Leptomonas and Blastocrithidia. J Eukaryot Microbiol. 2001;48:161–169. PubMed

Moreira D, López-García P, Vickerman K. An updated view of kinetoplastid phylogeny using environmental sequences and a closer outgroup: proposal for a new classification of the class Kinetoplastea. Int J Syst Evol Microbiol. 2004;54:1861–1875. PubMed

Nassonova E, Smirnov A, Fahrni J, Pawlowski J. Barcoding amoebae: comparison of SSU, ITS and COI genes as tools for molecular identification of naked lobose amoebae. Protist. 2010;161:102–115. PubMed

Pace N. A molecular view of microbial diversity and the biosphere. Science. 1997;276:734–740. PubMed

Pace N. Mapping the tree of life: progress and prospects. Microbiol Mol Biol Rev. 2009;73:565–576. PubMed PMC

Pawar H, Kulkarni A, Dixit T, Chaphekar D, Patole MS. A bioinformatics approach to reanalyze the genome annotation of kinetoplastid protozoan parasite Leishmania donovani. Genomics. 2014;104:554–561. PubMed

Pawlowski J, Audic S, Adl S, Bass D, Belbahri L, Berney C, Bowser SS, Čepička I, Decelle J, Dunthorn M, Fiore-Donno AM, Gile GH, Holzmann M, Jahn R, Jirků M, Keeling PJ, Kostka M, Kudryavtsev A, Lara E, Lukeš J, Mann DG, Mitchell EA, Nitsche F, Romeralo M, Saunders GW, Simpson AG, Smirnov AV, Spouge JL, Stern RF, Stoeck T, Zimmermann J, Schindel D, de Vargas C. CBOL Protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms. PLoS Biol. 2012;10: PubMed PMC

Pawlowski J, Christen R, Lecroq B, Bachar D, Shahbazkia HR, Amaral-Zettler L, Guillou L. Eukaryotic richness in the abyss: insights from pyrotag sequencing. PLoS ONE. 2011;6: PubMed PMC

Podlipaev SA. Catalogue of world fauna of Trypanosomatidae (Protozoa) Proc Zool Inst Leningrad. 1990;144:1–178.

Podlipaev SA, Sturm NR, Fiala I, Fernandes O, Westenberger SJ, Dollet M, Campbell DA, Lukeš J. Diversity of insect trypanosomatids assessed from the spliced leader RNA and 5S rRNA genes and intergenic regions. J Eukaryot Microbiol. 2004;51:283–290. PubMed

Pompanon F, Coissac E, Taberlet P. Metabarcoding, une nouvelle façon d’analyser la biodiversité. Biofutur. 2011;319:30–32. (Fre).

Pompanon F, Samadi S. Next generation sequencing for characterizing diversity: promises and challenges. Genetica. 2015;143:133–138. PubMed

Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glockner FO. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res. 2007;35:7188–7196. PubMed PMC

Salani FS, Arndt H, Hausmann K, Nitsche F, Scheckenbach F. Analysis of the community structure of abyssal kinetoplastids revealed similar communities at larger spatial scales. ISME J. 2012;6:713–723. PubMed PMC

Sauvadet AL, Gobet A, Guillou Comparative analysis between protist communities from the deep-sea pelagic ecosystem and specific deep hydrothermal habitats. Environ Microbiol. 2010;12:2946–2964. PubMed

Scheckenbach F, Hausmann K, Wylezich C, Weitere M, Arndt H. Large-scale patterns in biodiversity of microbial eukaryotes from the abyssal sea floor. Proc Natl Acad Sci USA. 2010;107:115–120. PubMed PMC

Simpson AG, Stevens JR, Lukes J. The evolution and diversity of kinetoplastid flagellates. Trends Parasitol. 2006;4:168–174. PubMed

Simpson L. Behavior of the kinetoplast of Leishmania tarentolae upon cell rupture. J Protozool. 1986;15:132–136. PubMed

Škodová-Sveráková I, Verner Z, Skalický T, Votýpka J, Horváth A, Lukeš J. Lineage-specific activities of a multipotent mitochondrion of trypanosomatid flagellates. Mol Microbiol. 2015;96:55–67. PubMed

Šlapeta J, Moreira D, Lopez-Garcia P. The extent of protist diversity: insights from molecular ecology of freshwater eukaryotes. Proc Biol Sci. 2005;272:2073–2081. PubMed PMC

Stern RF, Horak A, Andrew RL, Coffroth MA, Andersen RA, Küpper FC, Jameson I, Hoppenrath M, Véron B, Kasai F, Brand J, James ER, Keeling PJ. Environmental barcoding reveals massive dinoflagellate diversity in marine environments. PLoS ONE. 2010;5: PubMed PMC

Stoco PH, Wagner G, Talavera-Lopez C, Gerber A, Zaha A, Thompson CE, Bartholomeu DC, Lückemeyer DD, Bahia D, Loreto E, Prestes EB, Lima FM, Rodrigues-Luiz G, Vallejo GA, da Silveira JF, Filho, Schenkman S, Monteiro KM, Tyler KM, de Almeida LG, Ortiz MF, Chiurillo MA, de Moraes MH, Cunha OL, Mendonça R, Neto, Silva R, Teixeira SM, Murta SM, Sincero TC, Mendes TA, Urmenyi TP, Silva VG, DaRocha WD, Andersson B, Romanha AJ, Steindel M, de Vasconcelos AT, Grisard EC. Genome of the avirulent human-infective Trypanosome - Trypanosoma rangeli. PLoS Negl Trop Dis. 2014;8: PubMed PMC

Stoeck T, Schwarz MV, Boenigk J, Schweikert M, von der Heyden S, Behnke A. Cellular identity of an 18S rRNA gene sequence clade within the class Kinetoplastea: the novel genus Actuariola gen. nov. (Neobodonida) with description of the type species Actuariola framvarensis sp. nov. Int J Syst Evol Microbiol. 2005;55:2623–2635. PubMed

Stuart K, Brun R, Croft S, Fairlamb A, Gurtler RE, McKerrow J, Reed S, Tarleton R. Kinetoplastids: related protozoan pathogens, different diseases. J Clin Invest. 2008;118:1301–1310. PubMed PMC

Sturm NR, Martinez LLIT, Thomas S. Kinetoplastid genomics: the thin end of the wedge. Infect Genet Evol. 2008;8:901–906. PubMed PMC

Suarez AK, Tsutsui ND. The value of museum collections for research and society. Bioscience. 2004;54:66–73.

Taberlet P, Coissac E, Pompanon F, Brochmann C, Willerslev E. Towards next-generation biodiversity assessment using DNA metabarcoding. Mol Ecol. 2012;21:2045–2050. PubMed

Taib N, Mangot JF, Domaizon I, Bronner G, Debroas D. Phylogenetic affiliation of SSU rRNA genes generated by massively parallel sequencing: new insights into the freshwater protist diversity. PLoS ONE. 2013;8: PubMed PMC

Teixeira MM, Borghesan TC, Ferreira RC, Santos MA, Takata CS, Campaner M, Nunes VL, Milder RV, de Souza W, Camargo EP. Phylogenetic validation of the genera Angomonas and Strigomonas of trypanosomatids harboring bacterial endosymbionts with the description of new species of trypanosomatids and of proteobacterial symbionts. Protist. 2011;162:503–524. PubMed

Thomas S, Westenberger SJ, Campbell DA, Sturm NR. Intragenomic spliced leader RNA array analysis of kinetoplastids reveals unexpected transcribed region diversity in Trypanosoma cruzi. Gene. 2005;352:100–108. PubMed

Truc P, Büscher P, Cuny G, Gonzatti MI, Jannin J, Joshi P, Juyal P, Lun ZR, Mattioli R, Pays E, Simarro PP, Teixeira MM, Touratier L, Vincendeau P, Desquesnes M. Atypical human infections by animal trypanosomes. PLoS Negl Trop Dis. 2013;7: PubMed PMC

Týč J, Votýpka J, Klepetková H, Šuláková H, Jirků M, Lukeš J. Growing diversity of trypanosomatid parasites of flies (Diptera: Brachycera): frequent cosmopolitism and moderate host specificity. Mol Phylogenet Evol. 2013;69:255–264. PubMed

Vaerewijck MJ, Sabbe K, Baré J, Houf K. Microscopic and molecular studies of the diversity of free-living protozoa in meat-cutting plants. Appl Environ Microbiol. 2008;74:5741–5749. PubMed PMC

van Hannen EJ, Zwart G, van Agterveld MP, Gons HJ, Ebert J, Laanbroek HJ. Changes in bacterial and eukaryotic community structure after mass lysis of filamentous cyanobacteria associated with viruses. Appl Environ Microbiol. 1999;65:795–801. PubMed PMC

Vickerman K. Lumsden WHR, Evans DA.eds. Biology of the Kinetoplastida. Academic Press; London/New York/San Francisco: 1976. The diversity of the kinetoplastid flagellates; pp. 1–34.

Vickerman K. The evolutionary expansion of the trypanosomatid flagellates. Int J Parasitol. 1994;24:1317–1331. PubMed

Vickerman K, Preston TM. Lumsden WHR, Evans DA.eds. Biology of the Kinetoplastida. Academic Press: London/New York/San Francisco; 1976. Comparative cell biology of the kinetoplastid flagellates; pp. 35–130.

Viola LB, Almeida RS, Ferreira RC, Campaner M, Takata CSA, Rodrigues AC, Paiva F, Camargo EP, Teixeira MMG. Evolutionary history of trypanosomes from South American Caiman (Caiman yacare) and African crocodiles inferred by phylogenetic analyses using SSU rDNA and gGAPDH genes. Int J Parasitol. 2009;40:345–355. PubMed

Von der Heyden S, Cavalier-Smith T. Culturing and environmental DNA sequencing uncover hidden kinetoplastid diversity and a major marine clade within ancestrally freshwater Bodo designis. Int J Syst Evol Microbiol. 2005;55:2605–2621. PubMed

Votýpka J, d’Avila-Levy CM, Grellier P, Maslov D, Lukeš J, Yurchenko V. Systematics of Trypanosomatidae: criteria for taxonomic (re-) description. Trends Parasitol. 2015a;31:460–469. PubMed

Votýpka J, Klepetková H, Jirků M, Kment P, Lukeš J. Phylogenetic relationships of trypanosomatids parasitising true bugs (Insecta: Heteroptera) in sub-Saharan Africa. Int J Parasitol. 2012;42:489–500. PubMed

Votýpka J, Kostygov AY, Kraeva N, Grybchuk-Ieremenko A, Tesařová M, Grybchuk D, Lukeš J, Yurchenko V. Kentomonas gen. n., a new genus of endosymbiont-containing trypanosomatids of Strigomonadinae subfam. n. Protist. 2014;165:825–838. PubMed

Votýpka J, Maslov DA, Yurchenko V, Jirků M, Kment P, Lun ZR, Lukeš J. Probing into the diversity of trypanosomatid flagellates parasitizing insect hosts in South-West China reveals both endemism and global dispersal. Mol Phylogenet Evol. 2010;54:243–253. PubMed

Votýpka J, Rádrová J, Skalický T, Jirků M, Jirsová D, Mihalca AD, D‘Amico G, Petrželková KJ, Modrý D, Lukeš J. A tsetse and tabanid fly survey of African great apes habitats reveals the presence of a novel trypanosome lineage but the absence of Trypanosoma brucei. 10.1016/j.ijpara.2015.06.005.Int J Parasitol. 2015b PubMed

Votýpka J, Suková E, Kraeva N, Ishemgulova A, Duží I, Lukeš J, Yurchenko V. Diversity of trypanosomatids (Kinetoplastea: Trypanosomatidae) parasitizing fleas (Insecta: Siphonaptera) and description of a new genus Blechomonas gen. n. Protist. 2013;164:763–781. PubMed

Weinstock GM. Genomic approaches to studying the human microbiota. Nature. 2013;489:250–256. PubMed PMC

Westenberger SJ, Sturm NR, Yanega D, Podlipaev SA, Zeledón R, Campbell DA, Maslov DA. Trypanosomatid biodiversity in Costa Rica: genotyping of parasites from Heteroptera using the spliced leader RNA gene. Parasitology. 2004;129:537–547. PubMed

Wilfert L, Longdon B, Ferreira AG, Bayer F, Jiggins FM. Trypanosomatids are common and diverse parasites of Drosophila. Parasitology. 2011;138:858–865. PubMed

Wyatt KB, Campos PF, Gilbert MT, Kolokotronis SO, Hynes WH, DeSalle R, Ball SJ, Daszak P, MacPhee RD, Greenwood AD. Historical mammal extinction on Christmas Island (Indian Ocean) correlates with introduced infectious disease. PLoS ONE. 2008;3: PubMed PMC

Yurchenko VY, Kolesnikov AA, Lukeš J. Phylogenetic analysis of Trypanosomatina (Protozoa: Kinetoplastida) based on minicircle conserved regions. Folia Parasitol. 2000;47:1–5. PubMed

Yurchenko VY, Lukeš J, Jirků M, Maslov DA. Selective recovery of the cultivation-prone components from mixed trypanosomatid infections: a case of several novel species isolated from Neotropical Heteroptera. Int J Syst Evol Microbiol. 2009;59:893–909. PubMed

Yurchenko VY, Lukeš J, Tesařová M, Jirků M, Maslov DA. Morphological discordance of the new trypanosomatid species phylogenetically associated with the genus Crithidia. Protist. 2008;159:99–114. PubMed

Zídková L, Cepicka I, Szabová J, Svobodová M. Biodiversity of avian trypanosomes. Infect Genet Evol. 2012;12:102–112. PubMed

Nejnovějších 20 citací...

Zobrazit více v
Medvik | PubMed

Shining the spotlight on the neglected: new high-quality genome assemblies as a gateway to understanding the evolution of Trypanosomatidae

. 2023 Aug 21 ; 24 (1) : 471. [epub] 20230821

Distribution of Merlin in eukaryotes and first report of DNA transposons in kinetoplastid protists

. 2021 ; 16 (5) : e0251133. [epub] 20210506

Euglenozoa: taxonomy, diversity and ecology, symbioses and viruses

. 2021 Mar ; 11 (3) : 200407. [epub] 20210310

The Remarkable Metabolism of Vickermania ingenoplastis: Genomic Predictions

. 2021 Jan 14 ; 10 (1) : . [epub] 20210114

Vickermania gen. nov., trypanosomatids that use two joined flagella to resist midgut peristaltic flow within the fly host

. 2020 Dec 02 ; 18 (1) : 187. [epub] 20201202

First Draft Genome of the Trypanosomatid Herpetomonas muscarum ingenoplastis through MinION Oxford Nanopore Technology and Illumina Sequencing

. 2020 Feb 13 ; 5 (1) : . [epub] 20200213

If host is refractory, insistent parasite goes berserk: Trypanosomatid Blastocrithidia raabei in the dock bug Coreus marginatus

. 2020 ; 15 (1) : e0227832. [epub] 20200116

Trypanosomatid parasites in Austrian mosquitoes

. 2018 ; 13 (4) : e0196052. [epub] 20180419

Viral discovery and diversity in trypanosomatid protozoa with a focus on relatives of the human parasite Leishmania

. 2018 Jan 16 ; 115 (3) : E506-E515. [epub] 20171228

Molecular mechanisms of thermal resistance of the insect trypanosomatid Crithidia thermophila

. 2017 ; 12 (3) : e0174165. [epub] 20170322

Najít záznam

Citační ukazatele

Nahrávání dat ...

Možnosti archivace

Nahrávání dat ...