Assembly of D1/D2 complexes of photosystem II: Binding of pigments and a network of auxiliary proteins
Jazyk angličtina Země Spojené státy americké Médium print
Typ dokumentu časopisecké články, práce podpořená grantem
Grantová podpora
BB/L003260/1
Biotechnology and Biological Sciences Research Council - United Kingdom
BB/P00931X/1
Biotechnology and Biological Sciences Research Council - United Kingdom
PubMed
35134246
PubMed Central
PMC9157124
DOI
10.1093/plphys/kiac045
PII: 6521047
Knihovny.cz E-zdroje
- MeSH
- chlorofyl metabolismus MeSH
- feofytiny metabolismus MeSH
- fotosystém I (proteinový komplex) metabolismus MeSH
- fotosystém II (proteinový komplex) * metabolismus MeSH
- Synechocystis * metabolismus MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Názvy látek
- chlorofyl MeSH
- feofytiny MeSH
- fotosystém I (proteinový komplex) MeSH
- fotosystém II (proteinový komplex) * MeSH
Photosystem II (PSII) is the multi-subunit light-driven oxidoreductase that drives photosynthetic electron transport using electrons extracted from water. To investigate the initial steps of PSII assembly, we used strains of the cyanobacterium Synechocystis sp. PCC 6803 arrested at early stages of PSII biogenesis and expressing affinity-tagged PSII subunits to isolate PSII reaction center assembly (RCII) complexes and their precursor D1 and D2 modules (D1mod and D2mod). RCII preparations isolated using either a His-tagged D2 or a FLAG-tagged PsbI subunit contained the previously described RCIIa and RCII* complexes that differ with respect to the presence of the Ycf39 assembly factor and high light-inducible proteins (Hlips) and a larger complex consisting of RCIIa bound to monomeric PSI. All RCII complexes contained the PSII subunits D1, D2, PsbI, PsbE, and PsbF and the assembly factors rubredoxin A and Ycf48, but we also detected PsbN, Slr1470, and the Slr0575 proteins, which all have plant homologs. The RCII preparations also contained prohibitins/stomatins (Phbs) of unknown function and FtsH protease subunits. RCII complexes were active in light-induced primary charge separation and bound chlorophylls (Chls), pheophytins, beta-carotenes, and heme. The isolated D1mod consisted of D1/PsbI/Ycf48 with some Ycf39 and Phb3, while D2mod contained D2/cytochrome b559 with co-purifying PsbY, Phb1, Phb3, FtsH2/FtsH3, CyanoP, and Slr1470. As stably bound, Chl was detected in D1mod but not D2mod, formation of RCII appears to be important for stable binding of most of the Chls and both pheophytins. We suggest that Chl can be delivered to RCII from either monomeric Photosystem I or Ycf39/Hlips complexes.
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Barber J (2014) Photosystem II: its function, structure, and implications for artificial photosynthesis. Biochemistry (Moscow) 79: 185–196 PubMed
Bína D, Litvín R, Vácha F, Šiffel P (2006) New multichannel kinetic spectrophotometer–fluorimeter with pulsed measuring beam for photosynthesis research. Photosynthesis Res 88: 351–356 PubMed
Boehm M, Nield J, Zhang PP, Aro EM, Komenda J, Nixon PJ (2009) Structural and mutational analysis of band 7 proteins in the cyanobacterium Synechocystis sp strain PCC 6803. J Bacteriol 191: 6425–6435 PubMed PMC
Boehm M, Romero E, Reisinger V, Yu J, Komenda J, Eichacker LA, Dekker JP, Nixon PJ (2011) Investigating the early stages of photosystem II assembly in synechocystis sp. PCC 6803 isolation of CP47 and CP43 complexes. J Biol Chem 286: 14812–14819 PubMed PMC
Boehm M, Yu J, Reisinger V, Bečková M, Eichacker LA, Schlodder E, Komenda J, Nixon PJ (2012) Subunit composition of CP43-less photosystem II complexes of Synechocystis sp. PCC 6803: implications for the assembly and repair of photosystem II. Philos Trans R Soc Ser B Biol Sci 367: 3444–3454 PubMed PMC
Bučinská L, Kiss E, Koník P, Knoppová J, Komenda J, Sobotka R (2018) The ribosome-bound protein Pam68 promotes insertion of chlorophyll into the CP47 subunit of photosystem II. Plant Physiol 176: 2931–2942 PubMed PMC
Chidgey JW, Linhartová M, Komenda J, Jackson PJ, Dickman MJ, Canniffe DP, Koník P, Pilný J, Hunter CN, Sobotka R (2014) A cyanobacterial chlorophyll synthase-HliD complex associates with the Ycf39 protein and the YidC/Alb3 insertase. Plant Cell 26: 1267–1279 PubMed PMC
Cormann KU, Bartsch M, Rögner M, Nowaczyk MM (2014) Localization of the CyanoP binding site on photosystem II by surface plasmon resonance spectroscopy. Front Plant Sci 5: 595. PubMed PMC
Diner BA, Rappaport F (2002) Structure, dynamics, and energetics of the primary photochemistry of photosystem II of oxygenic photosynthesis. Ann Rev Plant Biol 53: 551–580 PubMed
Dobáková M, Sobotka R, Tichý M, Komenda J (2009) Psb28 protein is involved in the biogenesis of the photosystem II inner antenna CP47 (PsbB) in the cyanobacterium Synechocystis sp. PCC 6803. Plant Physiol 149: 1076–1086 PubMed PMC
Dobáková M, Tichý M, Komenda J (2007) Role of the PsbI protein in photosystem II assembly and repair in the cyanobacterium Synechocystis sp PCC 6803. Plant Physiol 145: 1681–1691 PubMed PMC
Eaton-Rye JJ, Vermaas WF (1991) Oligonucleotide-directed mutagenesis of psbB, the gene encoding CP47, employing a deletion mutant strain of the cyanobacterium Synechocystis sp. PCC 6803. Plant Mol Biol 17: 1165–1177 PubMed
García-Cerdán JG, Furst AL, McDonald KL, Schünemann D, Francis MB, Niyogi KK (2019) A thylakoid membrane-bound and redox-active rubredoxin (RBD1) functions in de novo assembly and repair of photosystem II. Proc Natl Acad Sci USA 116: 16631–16640 PubMed PMC
Giorgi LB, Nixon PJ, Merry SAP, Joseph DM, Durrant JR, Rivas JDL, Barber J, Porter G, Klug DR (1996) Comparison of primary charge separation in the photosystem II reaction center complex isolated from wild-type and D1-130 mutants of the cyanobacterium Synechocystis PCC 6803. J Biol Chem 271: 2093–2101 PubMed
Gisriel CJ, Zhou KF, Huang HL, Debus RJ, Xiong Y, Brudvig GW (2020) Cryo-EM structure of monomeric photosystem II from Synechocystis sp. PCC 6803 lacking the water-oxidation complex. Joule 4: 2131–2148
Gounaris K, Chapman DJ, Barber J (1989) Isolation and characterisation of a Dl/D2/cytochrome b-559 complex from Synechocystis 6803. Biochim Biophys Acta 973: 296–301
Gounaris K, Chapman DJ, Booth P, Crystall B, Giorgi LB, Klug DR, Porter G, Barber J (1990) Comparison of the D1/D2/cytochrome-b559 reaction center complex of photosystem two isolated by two different methods. FEBS Lett 265: 88–92 PubMed
Guskov A, Kern J, Gabdulkhakov A, Broser M, Zouni A, Saenger W (2009) Cyanobacterial photosystem II at 2.9-A resolution and the role of quinones, lipids, channels and chloride. Nat Struct Mol Biol 16: 334–342 PubMed
Heinz S, Liauw P, Nickelsen J, Nowaczyk M (2016) Analysis of photosystem II biogenesis in cyanobacteria. Biochim Biophys Acta 1857: 274–287 PubMed
Hey D, Grimm B (2018) ONE-HELIX PROTEIN2 (OHP2) is required for the stability of OHP1 and assembly factor HCF244 and is functionally linked to PSII biogenesis. Plant Physiol 177: 1453–1472 PubMed PMC
Hollingshead S, Kopečná J, Armstrong DR, Bučinská L, Jackson PJ, Chen GE, Dickman MJ, Williamson MP, Sobotka R, Hunter CN (2016) Synthesis of chlorophyll-binding proteins in a fully segregated Δycf54 strain of the cyanobacterium Synechocystis PCC 6803. Front Plant Sci 7: 292. PubMed PMC
Hollingshead S, Kopečná J, Jackson PJ, Canniffe DP, Davison PA, Dickman MJ, Sobotka R, Hunter CN (2012) Conserved chloroplast open-reading frame ycf54 is required for activity of the magnesium protoporphyrin monomethylester oxidative cyclase in Synechocystis PCC 6803. J Biol Chem 287: 27823–27833 PubMed PMC
Ifuku K (2015) Localization and functional characterization of the extrinsic subunits of photosystem II: an update. Biosci Biotechnol Biochem 79: 1223–1231 PubMed
Janouškovec J, Sobotka R, Lai DH, Flegontov P, Koník P, Komenda J, Ali S, Prášil O, Pain A, Oborník M, et al. (2013) Split photosystem protein, linear-mapping topology, and growth of structural complexity in the plastid genome of Chromera velia. Mol Biol Evol 30: 2447–2462 PubMed
Kato K, Miyazaki N, Hamaguchi T, Nakajima Y, Akita F, Yonekura K, Shen JR (2021) High-resolution cryo-EM structure of photosystem II reveals damage from high-dose electron beams. Commun Biol 4: 382. PubMed PMC
Kavanagh K, Jornvall H, Persson B, Oppermann U (2008) The SDR superfamily: functional and structural diversity within a family of metabolic and regulatory enzymes. Cell Mol Life Sci 65: 3895–3906 PubMed PMC
Kiss E, Knoppová J, Aznar GP, Pilný J, Yu J, Halada P, Nixon PJ, Sobotka R, Komenda J (2019) A photosynthesis-specific rubredoxin-like protein is required for efficient association of the D1 and D2 proteins during the initial steps of photosystem II assembly. Plant Cell 31: 2241–2258 PubMed PMC
Knoppová J, Sobotka R, Tichý M, Yu J, Koník P, Halada P, Nixon PJ, Komenda J (2014) Discovery of a chlorophyll binding protein complex involved in the early steps of photosystem II assembly in Synechocystis. Plant Cell 26: 1200–1212 PubMed PMC
Knoppová J, Yu JF, Janouškovec J, Halada P, Nixon PJ, Whitelegge JP, Komenda J (2021) The photosystem II assembly factor Ycf48 from the cyanobacterium Synechocystis sp. PCC 6803 is lipidated using an atypical lipobox sequence. Int J Mol Sci 22: 3733. PubMed PMC
Knoppová J, Yu JF, Konik P, Nixon PJ, Komenda J (2016) CyanoP is involved in the early steps of photosystem II assembly in the cyanobacterium Synechocystis sp PCC 6803. Plant Cell Physiol 57: 1921–1931 PubMed
Komenda J, Barker M, Kuviková S, de Vries R, Mullineaux CW, Tichý M, Nixon PJ (2006) The FtsH protease slr0228 is important for quality control of photosystem II in the thylakoid membrane of Synechocystis sp PCC 6803. J Biol Chem 281: 1145–1151 PubMed
Komenda J, Knoppová J, Kopečná J, Sobotka R, Halada P, Yu JF, Nickelsen J, Boehm M, Nixon PJ (2012a) The Psb27 assembly factor binds to the CP43 complex of photosystem II in the cyanobacterium Synechocystis sp. PCC 6803. Plant Physiol 158: 476–486 PubMed PMC
Komenda J, Knoppová J, Krynická V, Nixon PJ, Tichý M (2010) Role of FtsH2 in the repair of photosystem II in mutants of the cyanobacterium Synechocystis PCC 6803 with impaired assembly or stability of the CaMn4 cluster. Biochim Biophys Acta 1797: 566–575 PubMed
Komenda J, Nickelsen J, Tichý M, Prášil O, Eichacker LA, Nixon PJ (2008) The cyanobacterial homologue of HCF136/YCF48 is a component of an early photosystem II assembly complex and is important for both the efficient assembly and repair of photosystem II in Synechocystis sp PCC 6803. J Biol Chem 283: 22390–22399 PubMed
Komenda J, Reisinger V, Muller BC, Dobáková M, Granvogl B, Eichacker LA (2004) Accumulation of the D2 protein is a key regulatory step for assembly of the photosystem II reaction center complex in Synechocystis PCC 6803. J Biol Chem 279: 48620–48629 PubMed
Komenda J, Sobotka R (2016) Cyanobacterial high-light-inducible proteins - protectors of chlorophyll-protein synthesis and assembly. Biochim Biophys Acta 1857: 288–295 PubMed
Komenda J, Sobotka R, Nixon PJ (2012b) Assembling and maintaining the photosystem II complex in chloroplasts and cyanobacteria. Curr Opin Plant Biol 15: 245–251 PubMed
Kopečná J, Komenda J, Bučinská L, Sobotka R (2012) Long-term acclimation of the cyanobacterium Synechocystis sp. PCC 6803 to high light is accompanied by an enhanced production of chlorophyll that is preferentially channeled to trimeric photosystem I. Plant Physiol 160: 2239–2250 PubMed PMC
Koskela MM, Skotnicová P, Kiss É, Sobotka R (2020) Purification of protein-complexes from the cyanobacterium Synechocystis sp. PCC 6803 using FLAG-affinity chromatography. Bio-protocol 10: e3616. PubMed PMC
Krynická V, Shao S, Nixon PJ, Komenda J (2015) Accessibility controls selective degradation of photosystem II subunits by FtsH protease. Nat Plants 1: 15168. PubMed
Link S, Meierhoff K, Westhoff P (2012) The atypical short-chain dehydrogenases HCF173 and HCF244 are jointly involved in translational initiation of the psbA mRNA of Arabidopsis thaliana. Plant Physiol 160: 2202–2218. PubMed PMC
Lopez D, Koch G (2017) Exploring functional membrane microdomains in bacteria: an overview. Cur Opin Microbiol 36: 76–84 PubMed PMC
Lu Y (2016) Identification and roles of photosystem II assembly, stability, and repair factors in Arabidopsis. Front Plant Sci 7: 168. PubMed PMC
Malavath T, Caspy I, Netzer-El SY, Klaiman D, Nelson N (2018) Structure and function of wild-type and subunit-depleted photosystem I in Synechocystis. Biochim Biophys Acta 1859: 645–654 PubMed
Mayes SR, Dubbs JM, Vass I, Hideg E, Nagy L, Barber J (1993) Further characterization of the psbH locus of Synechocystis sp. PCC 6803: inactivation of psbH impairs QA to QB electron transport in photosystem 2. Biochemistry 32: 1454–1465 PubMed
Muller B, Eichacker LA (1999) Assembly of the D1 precursor in monomeric photosystem II reaction center precomplexes precedes chlorophyll a-triggered accumulation of reaction center II in barley etioplasts. Plant Cell 11: 2365–2377 PubMed PMC
Myouga F, Takahashi K, Tanaka R, Nagata N, Kiss AZ, Funk C, Nomura Y, Nakagami H, Jansson S, Shinozaki K (2018) Stable accumulation of photosystem II requires ONE-HELIX PROTEIN1 (OHP1) of the light harvesting-like family. Plant Physiol 176: 2277–2291 PubMed PMC
Nanba O, Satoh K (1987) Isolation of a photosystem-II reaction center consisting of D-1 and D-2 polypeptides and cytochrome-b-559. Proc Natl Acad Sci USA 84: 109–112 PubMed PMC
Nickelsen J, Rengstl B (2013) Photosystem II assembly: from cyanobacteria to plants. Ann Rev Plant Biol 64: 609–635 PubMed
Nixon PJ, Michoux F, Yu JF, Boehm M, Komenda J (2010) Recent advances in understanding the assembly and repair of photosystem II. Ann Bot 106: 1–16 PubMed PMC
Oren-Shamir M, Sai PSM, Edelman M, Scherz A (1995) Isolation and spectroscopic characterization of a plant-like photosystem-II reaction center from the cyanobacterium Synechocystis sp. 6803. Biochemistry 34: 5523–5526 PubMed
Pakrasi HB, Williams JGK, Arntzen CJ (1988) Targeted mutagenesis of the psbE and psbF genes blocks photosynthetic electron transport: evidence for a functional role of cytochrome b559 in photosystem II. EMBO J 7: 325–332 PubMed PMC
Rast A, Schaffer M, Albert S, Wan W, Pfeffer S, Beck F, Plitzko JM, Nickelsen J, Engel BD (2019) Biogenic regions of cyanobacterial thylakoids form contact sites with the plasma membrane. Nat Plants 5: 436–446 PubMed
Ritchie RJ (2006) Consistent sets of spectrophotometric chlorophyll equations for acetone, methanol and ethanol solvents. Photosynthesis Res 89: 27–41 PubMed
Rivera-Milla E, Stuermer CAO, Malaga-Trillo E (2006) Ancient origin of reggie (flotillin), reggie-like, and other lipid-raft proteins: convergent evolution of the SPFH domain. Cel Mol Life Sci 63: 343–357 PubMed PMC
Romero E, Diner Bruce A, Nixon Peter J, Coleman Wiliam J, Dekker Jan P, van Grondelle R (2012) Mixed exciton–charge-transfer states in photosystem II: stark spectroscopy on site-directed mutants. Biophys J 103: 185–194 PubMed PMC
Roose JL, Frankel LK, Mummadisetti MP, Bricker TM (2016) The extrinsic proteins of photosystem II: update. Planta 243: 889–908 PubMed
Saikawa N, Akiyama Y, Ito K (2004) FtsH exists as an exceptionally large complex containing HflKC in the plasma membrane of Escherichia coli. J Struct Biol 146: 123–129 PubMed
Schottkowski M, Gkalympoudis S, Tzekova N, Stelljes C, Schunemann D, Ankele E, Nickelsen J (2009) Interaction of the periplasmic PratA factor and the PsbA (D1) protein during biogenesis of photosystem II in Synechocystis sp PCC 6803. J Biol Chem 284: 1813–1819 PubMed
Shen GZ, Boussiba S, Vermaas WFJ (1993) Synechocystis sp PCC-6803 strains lacking Photosystem-I and phycobilisome function. Plant Cell 5: 1853–1863 PubMed PMC
Shinopoulos KE, Brudvig GW (2012) Cytochrome b559 and cyclic electron transfer within photosystem II. Biochim Biophys Acta 1817: 66–75 PubMed
Shukla MK, Llansola-Portoles MJ, Tichý M, Pascal AA, Robert B, Sobotka R (2018) Binding of pigments to the cyanobacterial high-light-inducible protein HliC. Photosynthesis Res 137: 29–39 PubMed
Staleva H, Komenda J, Shukla MK, Šlouf V, Kaňa R, Polívka T, Sobotka R (2015) Mechanism of photoprotection in the cyanobacterial ancestor of plant antenna proteins. Nat Chem Biol 11: 287–291 PubMed
Suzuki H, Yu JF, Kobayashi T, Nakanishi H, Nixon PJ, Noguchi T (2013) Functional roles of D2-Lys317 and the interacting chloride ion in the water oxidation reaction of photosystem II as revealed by Fourier transform infrared analysis. Biochemistry 52: 4748–4757 PubMed PMC
Tang XS, Chisholm DA, Dismukes GC, Brudvig GW, Diner BA (1993) Spectroscopic evidence from site-directed mutants of Synechocystis PCC6803 in favor of a close interaction between histidine-189 and redox-active tyrosine-1608 both of polypeptide D2 of the photosystem II reaction center. Biochemistry 32: 13742–13748 PubMed
Thompson EP (2016) Proteins involved in the maintenance of the photosynthetic apparatus in cyanobacteria and plants. PhD thesis. University College London, England.
Tomo T, Akimoto S, Tsuchiya T, Fukuya M, Tanaka K, Mimuro M (2008) Isolation and spectral characterization of photosystem II reaction center from Synechocystis sp PCC 6803. Photosynthesis Res 98: 293–302 PubMed
Torabi S, Umate P, Manavski N, Plochinger M, Kleinknecht L, Bogireddi H, Herrmann RG, Wanner G, Schroder WP, Meurer J (2014) PsbN is required for assembly of the photosystem II reaction center in Nicotiana tabacum. Plant Cell 26: 1183–1199 PubMed PMC
Trinugroho JP, Bečková M, Shao S, Yu J, Zhao Z, Murray JW, Sobotka R, Komenda J, Nixon PJ (2020) Chlorophyll f synthesis by a super-rogue photosystem II complex. Nat Plants 6: 238–244 PubMed
Umena Y, Kawakami K, Shen JR, Kamiya N (2011) Crystal structure of oxygen-evolving Photosystem II at a resolution of 1.9 Å. Nature 473: 55–60 PubMed
Vácha F, Durchan M, Siffel P (2002) Excitonic interactions in the reaction centre of photosystem II studied by using circular dichroism. Biochim Biophys Acta 1554: 147–152 PubMed
Walters RG, Shephard F, Rogers JJM, Rolfe SA, Horton P (2003) Identification of mutants of Arabidopsis defective in acclimation of photosynthesis to the light environment. Plant Physiol 131: 472–481 PubMed PMC
Xu Q, Bateman A, Finn RD, Abdubek P, Astakhova T, Axelrod HL, Bakolitsa C, Carlton D, Chen C, Chiu HJ, et al. (2010) Bacterial pleckstrin homology domains: a prokaryotic origin for the PH domain. J Mol Biol 396: 31–46 PubMed PMC
Yu JF, Knoppová J, Michoux F, Bialek W, Cota E, Shukla MK, Strašková A, Aznar GP, Sobotka R, Komenda J, et al. (2018) Ycf48 involved in the biogenesis of the oxygen-evolving photosystem II complex is a seven-bladed beta-propeller protein. Proc Natl Acad Sci USA 115: E7824–E7833 PubMed PMC
Zouni A, Witt HT, Kern J, Fromme P, Krauss N, Saenger W, Orth P (2001) Crystal structure of photosystem II from Synechococcus elongatus at 3.8 A resolution. Nature 409: 739–743 PubMed
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