Sampling methods that are both scientifically rigorous and ethical are cornerstones of any experimental biological research. Since its introduction 30 years ago, the method of using plasticine prey to quantify predation pressure has become increasingly popular in biology. However, recent studies have questioned the accuracy of the method, suggesting that misinterpretation of predator bite marks and the artificiality of the models may bias the results. Yet, bias per se might not be a methodological issue as soon as its statistical distribution in the samples is even, quantifiable, and thus correctable in quantitative analyses. In this study, we focus on avian predation of lepidopteran larvae models, which is one of the most extensively studied predator-prey interactions across diverse ecosystems worldwide. We compared bird predation on plasticine caterpillar models to that on dead caterpillars of similar size and color, using camera traps to assess actual predation events and to evaluate observer accuracy in identifying predation marks a posteriori. The question of whether plasticine models reliably measure insectivorous bird predation remained unanswered, for two reasons: (1) even the evaluation of experienced observers in the posterior assessment of predation marks on plasticine models was subjective to some extent, and (2) camera traps failed to reflect predation rates as assessed by observers, partly because they could only record evidence of bird presence rather than actual predation events. Camera traps detected more evidence of bird presence than predation clues on plasticine models, suggesting that fake prey may underestimate the foraging activity of avian insectivores. The evaluation of avian predation on real caterpillar corpses was probably also compromised by losses to other predators, likely ants. Given the uncertainties and limitations revealed by this study, and in the current absence of more effective monitoring methods, it remains simpler, more cost-effective, ethical, and reliable to keep using plasticine models to assess avian predation. However, it is important to continue developing improved monitoring technologies to better evaluate and refine these methods in order to advance research in this field.

• MeSH
• larva fyziologie   MeSH
• Lepidoptera fyziologie   MeSH
• predátorské chování * fyziologie   MeSH
• ptáci * fyziologie   MeSH
• zvířata MeSH
• Check Tag
• zvířata MeSH
• Publikační typ
• časopisecké články MeSH

We use community phylogenetics to elucidate the community assembly mechanisms for Geometridae moths (Lepidoptera) collected along a complete rainforest elevational gradient (200-3700 m a.s.l) on Mount Wilhelm in Papua New Guinea. A constrained phylogeny based on COI barcodes for 604 species was used to analyse 1390 species x elevation occurrences at eight elevational sites separated by 500 m elevation increments. We obtained Nearest Relatedness Index (NRI), Nearest Taxon Index (NTI) and Standardised Effect Size of Faith's Phylogenetic Diversity (SES.PD) and regressed these on temperature, plant species richness and predator abundance as key abiotic and biotic predictors. We also quantified beta diversity in the moth communities between elevations using the Phylogenetic Sorensen index. Overall, geometrid communities exhibited phylogenetic clustering, suggesting environmental filters, particularly at higher elevations at and above 2200 m a.s.l and no evidence of overdispersion. NRI, NTI and SES.PD showed no consistent trends with elevation or the studied biotic and abiotic variables. Change in community structure was driven by turnover of phylogenetic beta-diversity, except for the highest 2700-3200 m elevations, which were characterised by nested subsets of lower elevation communities. Overall, the elevational signal of geometrid phylogeny was weak-moderate. Additional insect community phylogeny studies are needed to understand this pattern.

• MeSH
• biodiverzita * MeSH
• deštný prales * MeSH
• fylogeneze * MeSH
• můry * genetika   fyziologie   klasifikace   MeSH
• nadmořská výška * MeSH
• zvířata MeSH
• Check Tag
• zvířata MeSH
• Publikační typ
• časopisecké články MeSH
• Geografické názvy
• Papua Nová Guinea MeSH

The El Niño 2015 event, most extreme since 1997, led to severe droughts in tropical wet Papua New Guinea (PNG), reducing May to October dry season rainfall by 75% in the lowlands and 25% in the highlands. Such droughts are likely to have significant effects on terrestrial ecosystems, but they have been poorly explored in Papua New Guinea. Here, we report changes in bird community composition prior to, during, and after the 2015 El Niño event along the elevational gradient ranging from 200 m to 2700 m a.s.l. at the Mt. Wilhelm rainforest in PNG. The abundance of birds in the lowlands dropped by 60% but increased by 40% at elevations above 1700 m during El Niño year. In the following year, the individual bird species reached mean population sizes similar to pre-El Niño years but did not fully recover. Species richness roughly followed the pattern of observed abundance and quickly and fully re-established after the event to the pre- El Niño values. Thus, at least some terrestrial birds seem to react quickly to the extreme droughts in lowlands and shift to less affected mountain habitats. We recorded upper elevational range limits to shifts by more than 500 m a.s.l. in 22 bird species (out of 237 recorded in total) during El Niño year, in contrast to their typical ranges. Our study suggests that a strong El Niño event can have strong but reversible effects on bird communities as long as they have an opportunity to move to more favorable sites through undisturbed habitats.

• Klíčová slova
• ENSO, Mt. Wilhelm, drought, elevational gradient, feeding guilds, forest birds, terrestrial birds,
• Publikační typ
• časopisecké články MeSH

Birds constitute one of the most important seed dispersal agents globally, especially in the tropics. The feeding preferences of frugivorous birds are, therefore, potentially of great ecological importance. A number of laboratory-based and observational studies have attempted to ascertain the preferences of certain bird species for certain fruit traits. However, little attention has been paid to community-wide preferences of frugivorous birds and the impact this may have on fruit traits on a broader scale. Here, we used artificial fruits of different colors and sizes to investigate community-wide fruit trait preferences of birds at three sites along an elevational gradient in Papua New Guinea. We recorded attack rates on artificial fruits as visible impressions made by a bird's beak during a feeding attempt. We also measured the colors and sizes of real fruits at each site, and the gape widths of frugivorous birds, allowing for comparisons between bird feeding preferences and bird and fruit traits. Regardless of elevation, red and purple fruits were universally preferred to green and attacked at similar rates to one another, despite strong elevational patterns in real fruit color. However, elevation had a significant effect on fruit size preferences. A weak, non-significant preference for large fruits was recorded at 700 m, while medium fruits were strongly preferred at 1700 m and small fruits at 2700 m. These patterns mirror those of both real fruit size and frugivorous bird gape width along the gradient, suggesting the potential for selective pressure of birds on fruit size at different elevations.

• Klíčová slova
• Papua New Guinea, artificial fruits, community level, elevation, frugivory, gape width,
• Publikační typ
• časopisecké články MeSH

The composition of gut bacterial communities is strongly influenced by the host diet in many animal taxa. For birds, the effect of diet on the microbiomes has been documented through diet manipulation studies. However, for wild birds, most studies have drawn on literature-based information to decipher the dietary effects, thereby, overlooking individual variation in dietary intake. Here we examine how naturally consumed diets influence the composition of the crop and cloacal microbiomes of twenty-one tropical bird species, using visual and metabarcoding-based identification of consumed diets and bacterial 16S rRNA microbiome sequencing. We show that diet intakes vary markedly between individuals of the same species and that literature-based dietary guilds grossly underestimate intraspecific diet variability. Furthermore, despite an effect of literature-based dietary guild assignment of host taxa, the composition of natural diets does not align with crop and cloacal microbiome similarity. However, host-taxon specific gut bacterial lineages are positively correlated with specific diet items, indicating that certain microbes associate with different diet components in specific avian hosts. Consequently, microbiome composition is not congruent with the overall consumed diet composition of species, but specific components of a consumed diet lead to host-specific effects on gut bacterial taxa.

• MeSH
• dieta * MeSH
• mikrobiota fyziologie   MeSH
• přijímání potravy fyziologie   MeSH
• ptáci klasifikace   mikrobiologie   fyziologie   MeSH
• střevní mikroflóra fyziologie   MeSH
• tropické klima * MeSH
• zvířata MeSH
• Check Tag
• zvířata MeSH
• Publikační typ
• časopisecké články MeSH
• práce podpořená grantem MeSH

Animal hosts have evolved intricate associations with microbial symbionts, where both depend on each other for particular functions. In many cases, these associations lead to phylosymbiosis, where phylogenetically related species harbour compositionally more similar microbiomes than distantly related species. However, evidence for phylosymbiosis is either weak or lacking in gut microbiomes of flying vertebrates, particularly in birds. To shed more light on this phenomenon, we compared cloacal microbiomes of 37 tropical passerine bird species from New Guinea using 16S rRNA bacterial gene sequencing. We show a lack of phylosymbiosis and document highly variable microbiomes. Furthermore, we find that gut bacterial community compositions are species-specific and tend to be shaped by host diet but not sampling locality, potentially driven by the similarities in habitats used by individual species. We further show that flight-associated gut modifications, coupled with individual dietary differences, shape gut microbiome structure and variation, contributing to the lack of phylosymbiosis. These patterns indicate that the stability of symbiosis may depend on microbial functional diversity rather than taxonomic composition. Furthermore, the more variable and fluid host-microbe associations suggest probable disparities in the potential for coevolution between bird host species and microbial symbionts.

• Klíčová slova
• diet, gut retention time, microbial heterogeneity, passeriformes, phylosymbiosis,
• MeSH
• dieta MeSH
• fylogeneze MeSH
• Passeriformes * MeSH
• RNA ribozomální 16S genetika   MeSH
• střevní mikroflóra * MeSH
• zvířata MeSH
• Check Tag
• zvířata MeSH
• Publikační typ
• časopisecké články MeSH
• práce podpořená grantem MeSH
• Geografické názvy
• Nová Guinea MeSH
• Názvy látek
• RNA ribozomální 16S MeSH

The usually positive inter-specific relationship between geographical range size and the abundance of local bird populations comes with exceptions. On continents, the majority of these exceptions have been described from tropical montane areas in Africa, where geographically-restricted bird species are unusually abundant. We asked how the local abundances of passerine and non-passerine bird species along an elevational gradient on Mt. Wilhelm, Papua New Guinea relate to their geographical range size. We collected data on bird assemblages at eight elevations (200-3,700 m, at 500 m elevational increments). We used a standardized point-counts at 16 points at each elevational study site. We partitioned the birds into feeding guilds, and we obtained data on geographical range sizes from the Bird-Life International data zone. We observed a positive relationship between abundance and geographical range size in the lowlands. This trend changed to a negative one towards higher elevations. The total abundances of the assemblage showed a hump-shaped pattern along the elevational gradient, with passerine birds, namely passerine insectivores, driving the observed pattern. In contrast to abundances, the mean biomass of the bird assemblages decreased with increasing elevation. Our results show that montane bird species maintain dense populations which compensate for the decreased available area near the top of the mountain.

• Klíčová slova
• Altitudinal gradient, Area compensation, Feeding guilds, Mt. Wilhelm, Non-passerines, Passerines,
• Publikační typ
• časopisecké články MeSH

BACKGROUND: Quaternary climate fluctuations are an engine of biotic diversification. Global cooling cycles, such as the Last Glacial Maximum (LGM), are known to have fragmented the ranges of higher-latitude fauna and flora into smaller refugia, dramatically reducing species ranges. However, relatively less is known about the effects of cooling cycles on tropical biota. RESULTS: We analyzed thousands of genome-wide DNA markers across an assemblage of three closely related understorey-inhabiting scrubwrens (Sericornis and Aethomyias; Aves) from montane forest along an elevational gradient on Mt. Wilhelm, the highest mountain of Papua New Guinea. Despite species-specific differences in elevational preference, we found limited differentiation within each scrubwren species, but detected a strong genomic signature of simultaneous population expansions at 27-29 ka, coinciding with the onset of the LGM. CONCLUSION: The remarkable synchronous timing of population expansions of all three species demonstrates the importance of global cooling cycles in expanding highland habitat. Global cooling cycles have likely had strongly different impacts on tropical montane areas versus boreal and temperate latitudes, leading to population expansions in the former and serious fragmentation in the latter.

• Klíčová slova
• Demographic history, Genetic expansion, Quaternary glaciations, Scrubwrens, Sericornis,
• MeSH
• biologická evoluce * MeSH
• databáze jako téma MeSH
• druhová specificita MeSH
• ekosystém * MeSH
• fylogeneze MeSH
• fylogeografie MeSH
• jednonukleotidový polymorfismus genetika   MeSH
• ledový příkrov * MeSH
• nadmořská výška MeSH
• počítačová simulace MeSH
• populační genetika MeSH
• pravděpodobnost MeSH
• sekvence nukleotidů MeSH
• zeměpis MeSH
• zpěvní ptáci růst a vývoj   MeSH
• zvířata MeSH
• Check Tag
• zvířata MeSH
• Publikační typ
• časopisecké články MeSH
• práce podpořená grantem MeSH
• Geografické názvy
• Papua Nová Guinea MeSH

Brood parasitism is a breeding strategy adopted by many species of cuckoos across the world. This breeding strategy influences the evolution of life histories of brood parasite species.In this study, we tested whether the degree on diet specialization is related to the breeding strategy in cuckoo species, by comparing brood parasite and nonparasite species. We measured the gradient of diet specialization of cuckoos, by calculating the Gini coefficient, an index of inequality, on the multiple traits describing the diet of species. The Gini coefficient is a measure of statistical dispersion on a scale between 0 and 1, reflecting a gradient from low to high specialization, respectively. First, we tested the strength of the phylogenetic signal of diet specialization index among cuckoo species worldwide. Then, we ran phylogenetic generalized least square (PGLS) models to compare diet specialization, distribution range, and body mass of parasitic and nonparasitic cuckoo species, considering the phylogenetic signal of data.After adjusting for the phylogenetic signal of the data and considering both, species distribution range and species body mass, brood parasitic cuckoos were characterized by higher diet specialization than nonbrood parasitic species. Brood parasitic species were also characterized by a larger breeding distribution range than nonparasitic species.The findings of this study provide an additional understanding of the cuckoos' ecology, relating diet and breeding strategies, information that could be important in conservation ecology.

• Klíčová slova
• brood parasitism, cuckoos, diet specialization, functional traits, generalist, phylogenetic signal,
• Publikační typ
• časopisecké články MeSH

The digestive tract microbiota (DTM) plays a plethora of functions that enable hosts to exploit novel niches. However, our understanding of the DTM of birds, particularly passerines, and the turnover of microbial communities along the digestive tract are limited. To better understand how passerine DTMs are assembled, and how the composition changes along the digestive tract, we investigated the DTM of seven different compartments along the digestive tract of nine New Guinean passerine bird species using Illumina MiSeq sequencing of the V4 region of the 16S rRNA. Overall, passerine DTMs were dominated by the phyla Firmicutes and Proteobacteria. We found bird species-specific DTM assemblages and the DTM of different compartments from the same species tended to cluster together. We also found a notable relationship between gut community similarity and feeding guilds (insectivores vs. omnivores). The dominant bacterial genera tended to differ between insectivores and omnivores, with insectivores mainly having lactic acid bacteria that may contribute to the breakdown of carbohydrates. Omnivorous DTMs were more diverse than insectivores and dominated by the bacterial phyla Proteobacteria and Tenericutes. These bacteria may contribute to nitrogen metabolism, and the diverse omnivorous DTMs may allow for more flexibility with varying food availability as these species have wider feeding niches. In well-sampled omnivorous species, the dominant bacterial genera changed along the digestive tracts, which was less prominent for insectivores. In conclusion, the DTMs of New Guinean passerines seem to be species specific and, at least in part, be shaped by bird diet. The sampling of DTM along the digestive tract improved capturing of a more complete set of members, with implications for our understanding of the interactions between symbiont and gut compartment functions.

• Klíčová slova
• MiSeq amplicon sequencing, insectivores, microbiome, nutrition, omnivores, symbiosis,
• Publikační typ
• časopisecké články MeSH