Membrane transport of root-borne trans-zeatin riboside maintains the cytokinin homeostasis in shoots
Jazyk angličtina Země Velká Británie, Anglie Médium print
Typ dokumentu časopisecké články
Grantová podpora
CZ.02.01.01/00/22_008/0004581
TowArds Next GENeration Crops
90254
TowArds Next GENeration Crops
Ministry of Education, Youth and Sports of Czechia
Imaging Facility of the Institute of Experimental Botany of the Czech Academy of Sciences
LM2023050
Ministry of Education, Youth and Sports of Czechia
PubMed
40853955
PubMed Central
PMC12675277
DOI
10.1093/jxb/eraf369
PII: 8240828
Knihovny.cz E-zdroje
- Klíčová slova
- Cytokinin, ENT3, cytokinin riboside, cytokinin transport, equilibrative nucleoside transporter, membrane transport,
- MeSH
- Arabidopsis * metabolismus genetika MeSH
- biologický transport MeSH
- cytokininy * metabolismus MeSH
- homeostáza MeSH
- isopentenyladenosin * metabolismus analogy a deriváty MeSH
- kořeny rostlin * metabolismus MeSH
- proteiny huseníčku * metabolismus genetika MeSH
- regulátory růstu rostlin * metabolismus MeSH
- tabák metabolismus genetika MeSH
- výhonky rostlin * metabolismus MeSH
- Publikační typ
- časopisecké články MeSH
- Názvy látek
- cytokininy * MeSH
- isopentenyladenosin * MeSH
- proteiny huseníčku * MeSH
- regulátory růstu rostlin * MeSH
- zeatin riboside MeSH Prohlížeč
Ribosylated forms of the plant hormones cytokinins (CKs) are the dominant CK species translocated over long distances. The irreplaceable role of root-to-shoot translocated trans-zeatin riboside in the mediation of shoot development implies the existence of a yet-uncharacterized CK riboside-specific membrane transport system. In this work, we report significant differences in the kinetics of the membrane transport of CK nucleobases and ribosides and the overall affinity of membrane-bound carriers towards the two CK forms. We further characterize the membrane transport of CK nucleobases and ribosides mediated by Arabidopsis EQULIBRATIVE NUCLEOSIDE TRANSPORTER 3 (AtENT3) in tobacco BY-2 cells. Combining experimental data with computational modelling, we show that residues Tyr61 and Asp129, which are conserved among plant ENTs but not among ENTs from other species, are necessary for CK binding and that their mutation abolishes the ability of AtENT3 to transport CKs. Finally, we show that changes in AtENT3 have different effects on the concentrations of trans-zeatin riboside throughout Arabidopsis plants and on the overall CK concentrations in roots, implying that AtENT3 participates in both the long- and the short-distance transport of CKs.
Zobrazit více v PubMed
Abraham M, Alekseenko A, Bergh C, et al. 2024. GROMACS 2023.5 source code. Zenodo. 10.5281/zenodo.11104849 DOI
Abraham MJ, Murtola T, Schulz R, Páll S, Smith JC, Hess B, Lindahl E. 2015. GROMACS: high performance molecular simulations through multi-level parallelism from laptops to supercomputers. SoftwareX 1–2, 19–25.
Alexander CR, Dingman DW, Schultes NP, Mourad GS. 2018. The solute transport profile of two Aza-guanine transporters from the honey bee pathogen PubMed
An G, Watson BD, Stachel S, Gordon MP, Nester EW. 1985. New cloning vehicles for transformation of higher plants. The EMBO Journal 4, 277–284. PubMed PMC
Best RB, Zhu X, Shim J, Lopes PEM, Mittal J, Feig M, MacKerell AD Jr. 2012. Optimization of the additive CHARMM all-atom protein force field targeting improved sampling of the backbone ϕ, ψ and side-chain χ PubMed PMC
Bishopp A, Lehesranta S, Vatén A, Help H, El-Showk S, Scheres B, Helariutta K, Mähönen AP, Sakakibara H, Helariutta Y. 2011. Phloem-transported cytokinin regulates polar auxin transport and maintains vascular pattern in the root meristem. Current Biology 21, 927–932. PubMed
Cavari BZ, Avi-Dor Y, Grossowicz N. 1967. Effect of carbonyl cyanide PubMed PMC
Chang L, Ramireddy E, Schmülling T. 2015. Cytokinin as a positional cue regulating lateral root spacing in PubMed PMC
Clough SJ, Bent AF. 1998. Floral dip: a simplified method for PubMed
Corbesier L, Prinsen E, Jacqmard A, Lejeune P, Van Onckelen H, Périlleux C, Bernier G. 2003. Cytokinin levels in leaves, leaf exudate and shoot apical meristem of PubMed
Cornelius S, Traub M, Bernard C, Salzig C, Lang P, Möhlmann T. 2012. Nucleoside transport across the plasma membrane mediated by equilibrative nucleoside transporter 3 influences metabolism of PubMed
Culos D, Watanabe M. 1983. The effect of carbonyl cyanide PubMed
Cunarro J, Weiner MW. 1975. Mechanism of action of agents which uncouple oxidative phosphorylation: direct correlation between protoncarrying and respiratory-releasing properties using rat liver mitochondria. Biochimica et Biophysica Acta – Bioenergetics 387, 234–240. PubMed
Curtis MD, Grossniklaus U. 2003. A gateway cloning vector set for high-throughput functional analysis of genes in planta. Plant Physiology 133, 462–469. PubMed PMC
Davière J-M, Achard P. 2013. Gibberellin signaling in plants. Development 140, 1147–1151. PubMed
De Rybel B, Adibi M, Breda AS, et al. 2014. Integration of growth and patterning during vascular tissue formation in PubMed
Delbarre A, Muller P, Imhoff V, Guern J. 1996. Comparison of mechanisms controlling uptake and accumulation of 2,4-dichlorophenoxy acetic acid, naphthalene-1-acetic acid, and indole-3-acetic acid in suspension-cultured tobacco cells. Planta 198, 532–541. PubMed
Dello Ioio R, Galinha C, Fletcher AG, et al. 2012. A PHABULOSA/cytokinin feedback loop controls root growth in PubMed
Dobránszki J, Mendler-Drienyovszki N. 2014. Cytokinin-induced changes in the chlorophyll content and fluorescence of PubMed
Dobrev PI, Kamínek M. 2002. Fast and efficient separation of cytokinins from auxin and abscisic acid and their purification using mixed-mode solid-phase extraction. Journal of Chromatography: A 950, 21–29. PubMed
Essmann U, Perera L, Berkowitz ML, Darden T, Lee H, Pedersen LG. 1995. A smooth particle mesh Ewald method. The Journal of Chemical Physics 103, 8577–8593.
Girke C, Daumann M, Niopek-Witz S, Möhlmann T. 2014. Nucleobase and nucleoside transport and integration into plant metabolism. Frontiers in Plant Science 5, 443. PubMed PMC
Goddard TD, Huang CC, Meng EC, Pettersen EF, Couch GS, Morris JH, Ferrin TE. 2018. UCSF ChimeraX: meeting modern challenges in visualization and analysis. Protein Science 27, 14–25. PubMed PMC
Hess B. 2008. P-LINCS: a parallel linear constraint solver for molecular simulation. Journal of Chemical Theory and Computation 4, 116–122. PubMed
Heytler PG. 1963. Uncoupling of oxidative phosphorylation by carbonyl cyanide phenylhydrazones. I. Some characteristics of m-CI-CCP action on mitochondria and chloroplasts. Biochemistry 2, 357–361. PubMed
Hirose N, Makita N, Yamaya T, Sakakibara H. 2005. Functional characterization and expression analysis of a gene, PubMed PMC
Hirose N, Takei K, Kuroha T, Kamada-Nobusada T, Hayashi H, Sakakibara H. 2008. Regulation of cytokinin biosynthesis, compartmentalization and translocation. Journal of Experimental Botany 59, 75–83. PubMed
Hošek P, Kubeš M, Laňková M, Dobrev PI, Klíma P, Kohoutová M, Petrášek J, Hoyerová K, Jiřina M, Zažímalová E. 2012. Auxin transport at cellular level: new insights supported by mathematical modelling. Journal of Experimental Botany 63, 3815–3827. PubMed PMC
Hu Y, Shani E. 2023. Cytokinin activity—transport and homeostasis at the whole plant, cell, and subcellular levels. New Phytologist 239, 1603–1608. PubMed
Humphrey W, Dalke A, Schulten K. 1996. VMD: visual molecular dynamics. Journal of Molecular Graphics 14, 33–38, 27–28. PubMed
Incarbone M, Bradamante G, Pruckner F, et al. 2023. Salicylic acid and RNA interference mediate antiviral immunity of plant stem cells. Proceedings of the National Academy of Sciences, USA 120, e2302069120. PubMed PMC
Jamruszka T, Banasiak J, Pawela A, et al. 2024. DOI
Jarzyniak K, Banasiak J, Jamruszka T, Pawela A, Donato MD, Novák O, Geisler M, Jasiński M. 2021. Early stages of legume–rhizobia symbiosis are controlled by ABCG-mediated transport of active cytokinins. Nature Plants 7, 428–436. PubMed
Jumper J, Evans R, Pritzel A, et al. 2021. Highly accurate protein structure prediction with AlphaFold. Nature 596, 583–589. PubMed PMC
Karbanova S, Sorf A, Jiraskova L, Lalinska A, Ptackova Z, Staud F, Cerveny L. 2020. PubMed
Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30, 772–780. PubMed PMC
Kim A, Chen J, Khare D, Jin J-Y, Yamaoka Y, Maeshima M, Zhao Y, Martinoia E, Hwang J-U, Lee Y. 2020. Non-intrinsic ATP-binding cassette proteins ABCI19, ABCI20 and ABCI21 modulate cytokinin response at the endoplasmic reticulum in PubMed PMC
Ko D, Kang J, Kiba T, et al. 2014. PubMed PMC
Korobova A, Kuluev B, Möhlmann T, Veselov D, Kudoyarova G. 2021. Limitation of cytokinin export to the shoots by nucleoside transporter ENT3 and its linkage with root elongation in Arabidopsis. Cells 10, 350. PubMed PMC
Králová M, Kubalová I, Hajný J, et al. 2024. A decoy receptor derived from alternative splicing fine-tunes cytokinin signaling in PubMed
Landrein B, Formosa-Jordan P, Malivert A, Schuster C, Melnyk CW, Yang W, Turnbull C, Meyerowitz EM, Locke JCW, Jönsson H. 2018. Nitrate modulates stem cell dynamics in PubMed PMC
Laskowski RA, Swindells MB. 2011. LigPlot+: multiple ligand–protein interaction diagrams for drug discovery. Journal of Chemical Information and Modeling 51, 2778–2786. PubMed
Leibfried A, To JPC, Busch W, Stehling S, Kehle A, Demar M, Kieber JJ, Lohmann JU. 2005. WUSCHEL controls meristem function by direct regulation of cytokinin-inducible response regulators. Nature 438, 1172–1175. PubMed
Lemkul J. 2019. From proteins to perturbed hamiltonians: a suite of tutorials for the GROMACS-2018 molecular simulation package [article v1.0]. Living Journal of Computational Molecular Science 1, 5068.
Li G, Liu K, Baldwin SA, Wang D. 2003. Equilibrative nucleoside transporters of PubMed
Liao P-S, Chen T-S, Chung P-C. 2001. A fast algorithm for multilevel thresholding. Journal of Information Science and Engineering 17, 713–727.
Lomin SN, Krivosheev DM, Steklov MY, Arkhipov DV, Osolodkin DI, Schmülling T, Romanov GA. 2015. Plant membrane assays with cytokinin receptors underpin the unique role of free cytokinin bases as biologically active ligands. Journal of Experimental Botany 66, 1851–1863. PubMed PMC
Lopes FL, Galvan-Ampudia C, Landrein B. 2021. WUSCHEL in the shoot apical meristem: old player, new tricks. Journal of Experimental Botany 72, 1527–1535. PubMed
Ma Y, Miotk A, Šutiković Z, et al. 2019. WUSCHEL acts as an auxin response rheostat to maintain apical stem cells in PubMed PMC
Mähönen AP, Bishopp A, Higuchi M, Nieminen KM, Kinoshita K, Törmäkangas K, Ikeda Y, Oka A, Kakimoto T, Helariutta Y. 2006. Cytokinin signaling and its inhibitor AHP6 regulate cell fate during vascular development. Science 311, 94–98. PubMed
Mandel T, Candela H, Landau U, Asis L, Zilinger E, Carles CC, Williams LE. 2016. Differential regulation of meristem size, morphology and organization by the ERECTA, CLAVATA and class III HD-ZIP pathways. Development 143, 1612–1622. PubMed PMC
Michniewicz M, Frick EM, Strader LC. 2015. Gateway-compatible tissue-specific vectors for plant transformation. BMC Research Notes 8, 63. PubMed PMC
Miller CO, Skoog F, Okumura FS, von Saltza MH, Strong FM. 1956. Isolation, structure and synthesis of kinetin, a substance promoting cell division. Journal of the American Chemical Society 78, 1375–1380.
Miyamoto S, Kollman PA. 1992. Settle: an analytical version of the SHAKE and RATTLE algorithm for rigid water models. Journal of Computational Chemistry 13, 952–962.
Möhlmann T, Mezher Z, Schwerdtfeger G, Neuhaus HE. 2001. Characterisation of a concentrative type of adenosine transporter from PubMed
Müller K, Dobrev PI, Pěnčík A, et al. 2021. DIOXYGENASE FOR AUXIN OXIDATION 1 catalyzes the oxidation of IAA amino acid conjugates. Plant Physiology 187, 103–115. PubMed PMC
Nagata T, Nemoto Y, Hasezawa S. 1992. Tobacco BY-2 cell line as the “HeLa” cell in the cell biology of higher plants. International Review of Cytology 132, 1–30.
Nedvěd D, Hošek P, Klíma P, Hoyerová K. 2021. Differential subcellular distribution of cytokinins: how does membrane transport fit into the big picture? International Journal of Molecular Sciences 22, 3428. PubMed PMC
Nedvěd D, Hudeček M, Klíma P, Lacek J, Müller K, Kuchařová A, Hošek P, Šmeringai J, Pernisová M, Motyka V, Plíhal O, Hoyerová K. 2025. Data from ‘Membrane transport of root-borne trans-zeatin riboside maintains the cytokinin homeostasis in shoots’. Zenodo, 10.5281/zenodo.16568211. PubMed DOI PMC
Newell DR, O’Connor PM, Hilary Calvert A, Harrap KR. 1986. The effect of the nucleoside transport inhibitor dipyridamole on the incorporation of [ PubMed
Osugi A, Kojima M, Takebayashi Y, Ueda N, Kiba T, Sakakibara H. 2017. Systemic transport of PubMed
Páll S, Abraham MJ, Kutzner C, Hess B, Lindahl E. 2015. Tackling exascale software challenges in molecular dynamics simulations with GROMACS. In: Markidis S, Laure E, eds. Solving software challenges for exascale. Cham: Springer International Publishing, 3–27.
Paul A, Laurila T, Vuorinen V, Divinski SV. 2014. Fick’s laws of diffusion. In: Paul A, Laurila T, Vuorinen V, Divinski SV, eds. Thermodynamics, diffusion and the Kirkendall effect in solids. Cham: Springer International Publishing, 115–139.
Pei J, Grishin NV. 2001. AL2CO: calculation of positional conservation in a protein sequence alignment. Bioinformatics 17, 700–712. PubMed
Qi Z, Xiong L. 2013. Characterization of a purine permease family gene PubMed
Radchuk V, Belew ZM, Gündel A, et al. 2023. SWEET11b transports both sugar and cytokinin in developing barley grains. The Plant Cell 35, 2186–2207. PubMed PMC
Ravindranath PA, Forli S, Goodsell DS, Olson AJ, Sanner MF. 2015. AutoDockFR: advances in protein-ligand docking with explicitly specified binding site flexibility. PLoS Computational Biology 11, e1004586. PubMed PMC
Richmond AE, Lang A. 1957. Effect of kinetin on protein content and survival of detached
Riefler M, Novak O, Strnad M, Schmülling T. 2006. PubMed PMC
Rong C, Zhang R, Liu Y, Chang Z, Liu Z, Ding Y, Ding C. 2024. Purine permease (PUP) family gene PUP11 positively regulates the rice seed setting rate by influencing seed development. Plant Cell Reports 43, 112. PubMed
Sakakibara H. 2021. Cytokinin biosynthesis and transport for systemic nitrogen signaling. The Plant Journal 105, 421–430. PubMed
Schaller GE, Street IH, Kieber JJ. 2014. Cytokinin and the cell cycle. Current Opinion in Plant Biology 21, 7–15. PubMed
Schrödinger, LLC. 2015. The PyMOL molecular graphics system, Version 1.8.
Silva-Navas J, Moreno-Risueno MA, Manzano C, Pallero-Baena M, Navarro-Neila S, Téllez-Robledo B, Garcia-Mina JM, Baigorri R, Gallego FJ, del Pozo JC. 2015. D-Root: a system for cultivating plants with the roots in darkness or under different light conditions. The Plant Journal 84, 244–255. PubMed
Skoog F, Miller CO. 1957. Chemical regulation of growth and organ formation in plant tissues cultured in vitro. Symposia of the Society for Experimental Biology 11, 118–130. PubMed
Šmeringai J, Rudolf J, Trtílek M, Procházková Schrumpfová P, Pernisová M. 2023. Shoot phenotyping of cytokinin receptors mutants revealed fluorescence parameters as early markers of drought stress. bioRxiv. 10.1101/2023.11.30.569457. [Preprint]. DOI
Stoffer-Bittner AJ, Alexander CR, Dingman DW, Mourad GS, Schultes NP. 2018. Functional characterization of the uracil transporter from honeybee pathogen PubMed
Sun J, Hirose N, Wang X, Wen P, Xue L, Sakakibara H, Zuo J. 2005.
Takei K, Sakakibara H, Taniguchi M, Sugiyama T. 2001. Nitrogen-dependent accumulation of cytokinins in root and the translocation to leaf: implication of cytokinin species that induces gene expression of maize response regulator. Plant & Cell Physiology 42, 85–93. PubMed
Talla SK, Panigrahy M, Kappara S, Nirosha P, Neelamraju S, Ramanan R. 2016. Cytokinin delays dark-induced senescence in rice by maintaining the chlorophyll cycle and photosynthetic complexes. Journal of Experimental Botany 67, 1839–1851. PubMed PMC
Tessi TM, Brumm S, Winklbauer E, et al. 2021. Arabidopsis AZG2 transports cytokinins PubMed
Tessi TM, Maurino VG, Shahriari M, et al. 2023. AZG1 is a cytokinin transporter that interacts with auxin transporter PIN1 and regulates the root stress response. New Phytologist 238, 1924–1941. PubMed
The GIMP Team . 2024. GNU image manipulation program.
The UniProt Consortium . 2023. UniProt: the universal protein knowledgebase in 2023. Nucleic Acids Research 51, D523–D531. PubMed PMC
To JPC, Deruère J, Maxwell BB, Morris VF, Hutchison CE, Ferreira FJ, Schaller GE, Kieber JJ. 2007. Cytokinin regulates type-A PubMed PMC
To JPC, Haberer G, Ferreira FJ, Deruère J, Mason MG, Schaller GE, Alonso JM, Ecker JR, Kieber JJ. 2004. Type-A Arabidopsis response regulators are partially redundant negative regulators of cytokinin signaling. The Plant Cell 16, 658–671. PubMed PMC
Traub M, Flörchinger M, Piecuch J, Kunz H, Weise-Steinmetz A, Deitmer Joachim W, Ekkehard Neuhaus H, Möhlmann T. 2007. The fluorouridine insensitive 1 ( PubMed
van der Walt SJ, Schönberger JL, Nunez-Iglesias J, Boulogne F, Warner JD, Yager N, Gouillart E, Yu T. 2014. scikit-image: image processing in Python. PeerJ 2, e453. PubMed PMC
Vanommeslaeghe K, MacKerell AD Jr. 2012. Automation of the CHARMM general force field (CGenFF) I: bond perception and atom typing. Journal of Chemical Information and Modeling 52, 3144–3154. PubMed PMC
Vanommeslaeghe K, Raman EP, MacKerell AD Jr. 2012. Automation of the CHARMM general force field (CGenFF) II: assignment of bonded parameters and partial atomic charges. Journal of Chemical Information and Modeling 52, 3155–3168. PubMed PMC
Virtanen P, Gommers R, Oliphant TE, et al. 2020. Scipy 1.0: fundamental algorithms for scientific computing in Python. Nature Methods 17, 261–272. PubMed PMC
Wang C, Yu L, Zhang J, et al. 2023. Structural basis of the substrate recognition and inhibition mechanism of PubMed PMC
Ward JL, Sherali A, Mo Z-P, Tse C-M. 2000. Kinetic and pharmacological properties of cloned human equilibrative nucleoside transporters, ENT1 and ENT2, stably expressed in nucleoside transporter-deficient PK15 cells: ENT2 EXHIBITS A LOW AFFINITY FOR GUANOSINE AND CYTIDINE BUT A HIGH AFFINITY FOR INOSINE. The Journal of Biological Chemistry 275, 8375–8381. PubMed
Waterhouse AM, Procter JB, Martin DMA, Clamp M, Barton GJ. 2009. Jalview version 2—a multiple sequence alignment editor and analysis workbench. Bioinformatics 25, 1189–1191. PubMed PMC
Werner T, Motyka V, Laucou V, Smets R, Van Onckelen H, Schmülling T. 2003. Cytokinin-deficient transgenic Arabidopsis plants show multiple developmental alterations indicating opposite functions of cytokinins in the regulation of shoot and root meristem activity. The Plant Cell 15, 2532–2550. PubMed PMC
Werner T, Motyka V, Strnad M, Schmülling T. 2001. Regulation of plant growth by cytokinin. Proceedings of the National Academy of Sciences, USA 98, 10487–10492. PubMed PMC
Woffendin C, Plagemann PGW. 1987. Interaction of [ PubMed
Wormit A, Traub M, Flörchinger M, Neuhaus HE, Möhlmann T. 2004. Characterization of three novel members of the PubMed PMC
Wright NJ, Lee S-Y. 2019. Structures of human ENT1 in complex with adenosine reuptake inhibitors. Nature Structural & Molecular Biology 26, 599–606. PubMed PMC
Wybouw B, De Rybel B. 2019. Cytokinin—a developing story. Trends in Plant Science 24, 177–185. PubMed
Xiao Y, Liu D, Zhang G, Gao S, Liu L, Xu F, Che R, Wang Y, Tong H, Chu C. 2019. PubMed
Xiao Y, Zhang J, Yu G, et al. 2020. Endoplasmic reticulum-localized PURINE PERMEASE1 regulates plant height and grain weight by modulating cytokinin distribution in rice. Frontiers in Plant Science 11, 618560. PubMed PMC
Yang Q, Zhang J, Kojima M, Takebayashi Y, Uragami T, Kiba T, Sakakibara H, Lee Y. 2022. ABCG11 modulates cytokinin responses in PubMed PMC
Yang W, Cortijo S, Korsbo N, Roszak P, Schiessl K, Gurzadyan A, Wightman R, Jönsson H, Meyerowitz E. 2021. Molecular mechanism of cytokinin-activated cell division in PubMed PMC
Yao SYM, Ng AML, Cass CE, Baldwin SA, Young JD. 2011. Nucleobase transport by human equilibrative nucleoside transporter 1 (hENT1). The Journal of Biological Chemistry 286, 32552–32562. PubMed PMC
Zhang K, Novak O, Wei Z, Gou M, Zhang X, Yu Y, Yang H, Cai Y, Strnad M, Liu C-J. 2014. PubMed
Zhao J, Yu N, Ju M, Fan B, Zhang Y, Zhu E, Zhang M, Zhang K. 2019. ABC transporter OsABCG18 controls the shootward transport of cytokinins and grain yield in rice. Journal of Experimental Botany 70, 6277–6291. PubMed PMC
Zhao J, Deng X, Qian J, et al. 2023. PubMed PMC
Zhao Y, Stoffler D, Sanner M. 2006. Hierarchical and multi-resolution representation of protein flexibility. Bioinformatics 22, 2768–2774. PubMed
Zürcher E, Liu J, di Donato M, Geisler M, Müller B. 2016. Plant development regulated by cytokinin sinks. Science 353, 1027–1030. PubMed
Membrane transport of root-borne trans-zeatin riboside maintains the cytokinin homeostasis in shoots