Lexis and Grammar of Mitochondrial RNA Processing in Trypanosomes
Jazyk angličtina Země Anglie, Velká Británie Médium print-electronic
Typ dokumentu časopisecké články, Research Support, N.I.H., Extramural, práce podpořená grantem, přehledy
Grantová podpora
R01 GM084065
NIGMS NIH HHS - United States
R01 AI091914
NIAID NIH HHS - United States
R01 GM129041
NIGMS NIH HHS - United States
R01 AI014102
NIAID NIH HHS - United States
R01 AI064653
NIAID NIH HHS - United States
R15 AI135885
NIAID NIH HHS - United States
R01 AI061580
NIAID NIH HHS - United States
R21 AI139448
NIAID NIH HHS - United States
R01 AI113157
NIAID NIH HHS - United States
R01 AI101057
NIAID NIH HHS - United States
R01 AI125487
NIAID NIH HHS - United States
MR/L019701/1
Medical Research Council - United Kingdom
PubMed
32191849
PubMed Central
PMC7083771
DOI
10.1016/j.pt.2020.01.006
PII: S1471-4922(20)30016-7
Knihovny.cz E-zdroje
- Klíčová slova
- RNA decay, RNA editing, Trypanosoma, kinetoplast, mitochondria, polyadenylation,
- MeSH
- editace RNA fyziologie MeSH
- RNA mitochondriální genetika metabolismus MeSH
- RNA protozoální genetika metabolismus MeSH
- Trypanosoma brucei brucei genetika metabolismus MeSH
- zvířata MeSH
- Check Tag
- zvířata MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- přehledy MeSH
- Research Support, N.I.H., Extramural MeSH
- Názvy látek
- RNA mitochondriální MeSH
- RNA protozoální MeSH
Trypanosoma brucei spp. cause African human and animal trypanosomiasis, a burden on health and economy in Africa. These hemoflagellates are distinguished by a kinetoplast nucleoid containing mitochondrial DNAs of two kinds: maxicircles encoding ribosomal RNAs (rRNAs) and proteins and minicircles bearing guide RNAs (gRNAs) for mRNA editing. All RNAs are produced by a phage-type RNA polymerase as 3' extended precursors, which undergo exonucleolytic trimming. Most pre-mRNAs proceed through 3' adenylation, uridine insertion/deletion editing, and 3' A/U-tailing. The rRNAs and gRNAs are 3' uridylated. Historically, RNA editing has attracted major research effort, and recently essential pre- and postediting processing events have been discovered. Here, we classify the key players that transform primary transcripts into mature molecules and regulate their function and turnover.
Department of Biochemistry and Biophysics Texas A and M University College Station TX 77843 USA
Department of Biochemistry and Molecular Biology University of Georgia Athens GA 30602 USA
Department of Chemistry and Biochemistry University of Bern Bern CH 3012 Switzerland
Department of Microbiology The Ohio State University Columbus OH 43210 USA
Department of Molecular and Cell Biology Boston University Medical Campus Boston MA 02118 USA
Department of Molecular Genetics Darmstadt University of Technology 64287 Darmstadt Germany
Institute of Cell Biology University of Bern Baltzerstrasse 4 Bern CH 3012 Switzerland
Institute of Immunology and Infection Research University of Edinburgh Edinburgh EH9 3FL UK
Parasitology Laboratory Wadsworth Center New York State Department of Health Albany NY 12201 USA
School of Life Science and Technology ShanghaiTech University Shanghai 201210 China
University of Minnesota Medical School Duluth campus Duluth MN 55812 USA
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Steverding D (2008) The history of African trypanosomiasis. Parasit. Vectors 1, 3. PubMed PMC
Maslov DA et al. (2019) Recent advances in trypanosomatid research: genome organization, expression, metabolism, taxonomy and evolution. Parasitology 146, 1–27 PubMed
Ramrath DJF et al. (2018) Evolutionary shift toward protein based architecture in trypanosomal mitochondrial ribosomes. Science 362, eaau7735. PubMed
Simpson AM et al. (1989) Kinetoplastid mitochondria contain functional tRNAs which are encoded in nuclear DNA and also small minicircle and maxicircle transcripts of unknown function. Nucleic Acids Res. 17, 5427–5445 PubMed PMC
Hancock K and Hajduk SL (1990) The mitochondrial tRNAs of PubMed
Benne R et al. (1986) Major transcript of the frameshifted coxII gene from trypanosome mitochondria contains four nucleotides that are not encoded in the DNA. Cell 46, 819–826 PubMed
Gray MW et al. (2010) Cell biology. Irremediable complexity? Science 330, 920–921 PubMed
Ochsenreiter T et al. (2008) Alternative mRNA editing in trypanosomes is extensive and may contribute to mitochondrial protein diversity. PLoS ONE 3, e1566. PubMed PMC
Ochsenreiter T et al. (2007) KISS: the kinetoplastid RNA editing sequence search tool. RNA 13, 1–4 PubMed PMC
Kirby LE et al. (2016) Analysis of the PubMed PMC
Koslowsky D et al. (2014) The insect-phase gRNA transcriptome in PubMed PMC
Aphasizhev R and Aphasizheva I (2014) Mitochondrial RNA editing in trypanosomes: Small RNAs in control. Biochimie 100, 125–131 PubMed PMC
Aphasizhev R and Aphasizheva I (2011) Uridine insertion/deletion mRNA editing in trypanosomes: a playground for RNA-guided information transfer. Wiley Interdiscip. Rev. RNA 2, 669–685 PubMed PMC
Hashimi H et al. (2013) Dual core processing: MRB1 is an emerging kinetoplast RNA editing complex. Trends Parasitol. 29, 91–99 PubMed PMC
Read LK et al. (2016) Trypanosome RNA editing: the complexity of getting U in and taking U out. Wiley Interdiscip. Rev. RNA 7, 33–51 PubMed PMC
Goringer HU (2012) ‘Gestalt,’ composition and function of the PubMed
Cruz-Reyes J et al. (2018) Dynamic RNA holo-editosomes with subcomplex variants: Insights into the control of trypanosome editing. Wiley Interdiscip. Rev. RNA 9, e1502. PubMed PMC
Zimmer SL et al. (2018) High throughput sequencing revolution reveals conserved fundamentals of U-indel editing. Wiley Interdiscip. Rev. RNA 9, e1487 PubMed PMC
Sement FM et al. (2018) Transcription initiation defines kinetoplast RNA boundaries. Proc. Natl. Acad. Sci. U. S. A 115, E10323–E10332 PubMed PMC
Suematsu T et al. (2016) Antisense transcripts delimit exonucleolytic activity of the mitochondrial 3’ processome to generate guide RNAs. Mol. Cell 61, 364–378 PubMed PMC
Aphasizheva I and Aphasizhev R (2010) RET1-catalyzed uridylylation shapes the mitochondrial transcriptome in PubMed PMC
Mattiacio JL and Read LK (2008) Roles for TbDSS-1 in RNA surveillance and decay of maturation by-products from the 12S rRNA locus. Nucleic Acids Res. 36, 319–329 PubMed PMC
Ryan CM and Read LK (2005) UTP-dependent turnover of PubMed PMC
Kao CY and Read LK (2005) Opposing effects of polyadenylation on the stability of edited and unedited mitochondrial RNAs in PubMed PMC
Zhang L et al. (2017) PPR polyadenylation factor defines mitochondrial mRNA identity and stability in trypanosomes. EMBOJ. 36, 2435–2454 PubMed PMC
Aphasizheva I et al. (2011) Pentatricopeptide repeat proteins stimulate mRNA adenylation/uridylation to activate mitochondrial translation in trypanosomes. Mol. Cell 42, 106–117 PubMed PMC
Etheridge RD et al. (2008) 3’ adenylation determines mRNA abundance and monitors completion of RNA editing in PubMed PMC
Mesitov MV et al. (2019) Pentatricopeptide repeat poly(A) binding protein KPAF4 stabilizes mitochondrial mRNAs in PubMed PMC
Aphasizheva I et al. (2016) Ribosome-associated pentatricopeptide repeat proteins function as translational activators in mitochondria of trypanosomes. Mol. Microbiol 99, 1043–1058 PubMed PMC
Ridlon L et al. (2013) The importance of the 45S ribosomal small subunit-related complex for mitochondrial translation in PubMed PMC
Saurer M et al. (2019) Mitoribosomal small subunit biogenesis in trypanosomes involves an extensive assembly machinery. Science 365, 1144–1149 PubMed
Stuart KD et al. (2005) Complex management: RNA editing in trypanosomes. Trends Biochem. Sci 30, 97–105 PubMed
Simpson L et al. (2010) Guide to the nomenclature of kinetoplastid RNA editing: a proposal. Protist 161, 2–6 PubMed PMC
Read LK et al. (1992) Extensive editing of both processed and preprocessed maxicircle CR6 transcripts in PubMed
Koslowsky DJ and Yahampath G (1997) Mitochondrial mRNA 3’ cleavage polyadenylation and RNA editing in PubMed
Michelotti EF et al. (1992) PubMed
Carnes J et al. (2015) Bloodstream form PubMed PMC
Adler BK et al. (1991) Modification of PubMed PMC
Bhat GJ et al. (1991) The two ATPase 6 mRNAs of PubMed
Blum B et al. (1990) A model for RNA editing in kinetoplastid mitochondria: ‘Guide’ RNA molecules transcribed from maxicircle DNA provide the edited information. Cell 60, 189–198 PubMed
Madina BR et al. (2011) Guide RNA biogenesis involves a novel RNase III family endoribonuclease in PubMed PMC
Schnaufer A et al. (2001) An RNA ligase essential for RNA editing and survival of the bloodstream form of PubMed
Aphasizhev R et al. (2003) A tale of two TUTases. Proc. Natl. Acad. Sci. U. S. A 100, 10617–10622 PubMed PMC
Aphasizhev R et al. (2002) Trypanosome mitochondrial 3’ terminal uridylyl transferase (TUTase): the key enzyme in U-insertion/deletion RNA editing. Cell 108, 637–648 PubMed
Aphasizheva I et al. (2004) RNA-editing terminal uridylyl transferase 1: identification of functional domains by mutational analysis. J. Biol. Chem 279, 24123–24130 PubMed
Aphasizheva I et al. (2014) RNA binding and core complexes constitute the U-insertion/deletion editosome. Mol. Cell. Biol 34, 4329–4342 PubMed PMC
Aphasizhev R et al. (2016) Constructive edge of uridylation-induced RNA degradation. RNA Biol. 13, 1078–1083 PubMed PMC
Menezes MR et al. (2018) 3’ RNA uridylation in epitranscriptomics, gene regulation, and disease. Front. Mol. Biosci 5, 61. PubMed PMC
Jasmer D and Stuart K (1986) Sequence organization in African trypanosome minicircles is defined by 18 base pair inverted repeats. Mol. Biochem. Parasitol 18, 321–332 PubMed
Pollard VW et al. (1990) Organization of minicircle genes for guide RNAs in PubMed
Cooper S et al. (2019) Assembly and annotation of the mitochondrial minicircle genome of a differentiation-competent strain of PubMed PMC
Simpson L et al. (2015) Comparison of the mitochondrial genomes and steady state transcriptomes of two strains of the trypanosomatid parasite, PubMed PMC
Simpson RM et al. (2016) High-throughput sequencing of partially edited trypanosome mRNAs reveals barriers to editing progression and evidence for alternative editing. RNA 22, 677–695 PubMed PMC
Chung CZ et al. (2017) Tipping the balance of RNA stability by 3’ editing of the transcriptome. Biochim. Biophys. Acta Gen. Subj 1861, 2971–2979 PubMed
Ryan CM et al. (2003) Polyadenylation regulates the stability of PubMed
Small ID and Peeters N (2000) The PPR motif–ma TPR related motif prevalent in plant organellar proteins. Trends Biochem. Sci 25, 46–47 PubMed
Shen C et al. (2016) Structural basis for specific single-stranded RNA recognition by designer pentatricopeptide repeat proteins. Nat. Commun 7, 11285. PubMed PMC
Barkan A and Small I (2014) Pentatricopeptide repeat proteins in plants. Annu. Rev. Plant Biol 65, 415–442 PubMed
Pfalz J et al. (2009) Site-specific binding of a PPR protein defines and stabilizes 5’ and 3’ mRNA termini in chloroplasts. EMBO J. 28, 2042–2052 PubMed PMC
Cheng S et al. (2016) Redefining the structural motifs that determine RNA binding and RNA editing by pentatricopeptide repeat proteins in land plants. Plant J. 85, 532–547 PubMed
Feagin JE et al. (1988) Creation of AUG initiation codons by addition of uridines within cytochrome b transcripts of kinetoplastids. PNAS 85, 539–543 PubMed PMC
Koslowsky DJ et al. (1990) The MURF3 gene of PubMed
Seiwert SD et al. (1996) Direct visualization of uridylate deletion in vitro suggests a mechanism for kinetoplastid RNA editing. Cell 84, 831–841 PubMed
Kable ML et al. (1996) RNA editing: a mechanism for gRNAspecified uridylate insertion into precursor mRNA [see comments]. Science 273, 1189–1195 PubMed
Seiwert SD and Stuart K (1994) RNA editing: transfer of genetic information from gRNA to precursor mRNA in vitro. Science 266, 114–117 PubMed
Sturm NR and Simpson L (1990) Kinetoplast DNA minicircles encode guide RNAs for editing of cytochrome oxidase subunit III mRNA. Cell 61, 879–884 PubMed
Golden DE and Hajduk SL (2005) The 3’-untranslated region of cytochrome oxidase II mRNA functions in RNA editing of African trypanosomes exclusively as a cis guide RNA. RNA 11, 29–37 PubMed PMC
Koslowsky DJ et al. (1991) Cycles of progressive realignment of gRNA with mRNA in RNA editing. Cell 67, 537–546 PubMed
Simpson RM et al. (2017) Trypanosome RNA Editing Mediator Complex proteins have distinct functions in gRNA utilization. Nucleic Acids Res. 45, 7965–7983 PubMed PMC
Gerasimov ES et al. (2018) Trypanosomatid mitochondrial RNA editing: dramatically complex transcript repertoires revealed with a dedicated mapping tool. Nucleic Acids Res. 46,765–781 PubMed PMC
Maslov DA and Simpson L (1992) The polarity of editing within a multiple gRNA-mediated domain is due to formation of anchors for upstream gRNAs by downstream editing. Cell 70, 459–467 PubMed
Igo RP Jr. et al. (2002) RNA sequence and base pairing effects on insertion editing in PubMed PMC
Blanc V et al. (1999) The mitochondrial RNA ligase from PubMed
Cruz-Reyes J et al. (2001) Trypanosome RNA editing: simple guide RNA features enhance U deletion 100-fold. Mol. Cell. Biol 21, 884–892 PubMed PMC
Aphasizhev R et al. (2003) Isolation of a U-insertion/deletion editing complex from Leishmania tarentolae mitochondria. EMBO J. 22, 913–924 PubMed PMC
Panigrahi AK et al. (2003) Identification of novel components of PubMed PMC
Golas MM et al. (2009) Snapshots of the RNA editing machine in trypanosomes captured at different assembly stages PubMed PMC
Li F et al. (2009) Structure of the core editing complex (L-complex) involved in uridine insertion/deletion RNA editing in trypanosomatid mitochondria. Proc. Natl. Acad. Sci. U. S. A 106, 12306–12310 PubMed PMC
Rusche LN et al. (1997) Purification of a functional enzymatic editing complex from PubMed PMC
Guo X et al. (2012) KREPB6, KREPB7, and KREPB8 are important for editing endonuclease function in PubMed PMC
Carnes J et al. (2012) KREX2 is not essential for either procyclic or bloodstream form PubMed PMC
Ernst NL et al. (2009) Differential functions of two editosome exoUases in PubMed PMC
Carnes J et al. (2008) RNA Editing in PubMed PMC
Carnes J et al. (2017) PubMed PMC
Macrae IJ and Doudna JA (2007) Ribonuclease revisited: structural insights into ribonuclease III family enzymes. Curr. Opin. Struct. Biol 17, 138–145 PubMed
Carnes J et al. (2012) Mutational analysis of PubMed PMC
McDermott SM et al. (2019) Editosome RNase III domain interactions are essential for editing and differ between life cycle stages in PubMed PMC
McDermott SM and Stuart K (2017) The essential functions of KREPB4 are developmentally distinct and required for endonuclease association with editosomes. RNA 23, 1672–1684 PubMed PMC
McDermott SM et al. (2016) The Architecture of PubMed PMC
Schnaufer A et al. (2003) Separate Insertion and deletion subcomplexes of the PubMed
Schnaufer A et al. (2010) A protein–protein interaction map of trypanosome ~20S editosomes. J. Biol. Chem 285, 5282–5295 PubMed PMC
Kang X et al. (2006) Reconstitution of full-round uridinedeletion RNA editing with three recombinant proteins. Proc. Natl. Acad. Sci. U. S. A 103, 13944–13949 PubMed PMC
Gao G et al. (2005) Functional complementation of PubMed PMC
Rogers K et al. (2007) Uridylate-specific 3’ 5’-exoribonucleases involved in uridylate-deletion RNA editing in trypanosomatid mitochondria. J. Biol. Chem 282, 29073–29080 PubMed
Ringpis GE et al. (2010) Mechanism of U insertion RNA editing in trypanosome mitochondria: the bimodal TUTase activity of the core complex. J. Mol. Biol 399, 680–695 PubMed PMC
Ringpis GE et al. (2010) Mechanism of U-insertion RNA editing in trypanosome mitochondria: characterization of RET2 functional domains by mutational analysis. J. Mol. Biol 399, 696–706 PubMed PMC
Ernst NL et al. (2003) TbMP57 is a 3’ terminal uridylyl transferase (TUTase) of the PubMed
Deng J et al. (2005) Structural basis for UTP specificity of RNA editing TUTases from PubMed PMC
Gao G and Simpson L (2003) Is the PubMed
Huang CE et al. (2001) Roles for ligases in the RNA editing complex of PubMed PMC
Pollard VW et al. (1992) Native mRNA editing complexes from PubMed PMC
Osato D et al. (2009) Uridine insertion/deletion RNA editing in trypanosomatid mitochondria: In search of the editosome. RNA 15, 1338–1344 PubMed PMC
Aphasizheva I and Aphasizhev R (2015) U-insertion/deletion mRNA-editing holoenzyme: definition in sight. Trends Parasitol. 13, 1078–1083 PubMed PMC
Panigrahi AK et al. (2007) Mitochondrial complexes in PubMed
Weng J et al. (2008) Guide RNA-binding complex from mitochondria of trypanosomatids. Mol. Cell 32, 198–209 PubMed PMC
Hashimi H et al. (2009) Kinetoplastid guide RNA biogenesis is dependent on subunits of the mitochondrial RNA binding complex 1 and mitochondrial RNA polymerase. RNA 15, 588–599 PubMed PMC
Madina BR et al. (2014) Native mitochondrial RNA-binding complexes in kinetoplastid RNA editing differ in guide RNA composition. RNA 20, 1142–1152 PubMed PMC
Huang Z et al. (2015) Integrity of the core mitochondrial RNA binding complex 1 is vital for trypanosome RNA editing. RNA 21, 2088–2102 PubMed PMC
McAdams NM et al. (2019) MRB10130 is a RESC assembly factor that promotes kinetoplastid RNA editing initiation and progression. RNA 25, 1177–1191 PubMed PMC
McAdams NM et al. (2018) MRB7260 is essential for productive protein–RNA interactions within the RNA editing substrate binding complex during trypanosome RNA editing. RNA 24, 540–556 PubMed PMC
Ammerman ML et al. (2010) TbRGG2 facilitates kinetoplastid RNA editing initiation and progression past intrinsic pause sites. RNA 16, 2239–2251 PubMed PMC
Dixit S et al. (2017) Differential binding of mitochondrial transcripts by MRB8170 and MRB4160 regulates distinct editing fates of mitochondrial mRNA in trypanosomes. mBio 8, e02288–16 PubMed PMC
Ammerman ML et al. (2012) Architecture of the trypanosome RNA editing accessory complex, MRB1. Nucleic Acids Res. 40, 5637–5650 PubMed PMC
Aphasizhev R et al. (2003) A 100-kD complex of two RNA binding proteins from mitochondria of Leishmania tarentolae catalyzes RNA annealing and interacts with several RNA editing components. RNA 9, 62–76 PubMed PMC
Nikpour N and Salavati R (2019) The RNA binding activity of the first identified trypanosome protein with Z-DNA-binding domains. Sci. Rep 9, 5904. PubMed PMC
Kumar V et al. (2019) Protein features for assembly of the RNA editing helicase 2 subcomplex (REH2C) in trypanosome holo-editosomes. PLoS One 14, e0211525. PubMed PMC
Madina BR et al. (2015) Native variants of the MRB1 complex exhibit specialized functions in kinetoplastid RNA editing. PLoS ONE 10, e0123441. PubMed PMC
Hernandez A et al. (2010) REH2 RNA helicase in kinetoplastid mitochondria: ribonucleoprotein complexes and essential motifs for unwinding and guide RNA (gRNA) binding. J. Biol. Chem 285, 1220–1228 PubMed PMC
Kumar V et al. (2016) REH2C Helicase and GRBC subcomplexes may base pair through mRNA and small guide RNA in kinetoplastid editosomes. J. Biol. Chem 291, 5753–5764 PubMed PMC
Aphasizheva I et al. (2009) Novel TUTase associates with an editosome-like complex in mitochondria of PubMed PMC
Stagno J et al. (2010) Structure of the mitochondrial editosome-like complex associated TUTase 1 reveals divergent mechanisms of UTP selection and domain organization. J. Mol. Biol 399, 464–475 PubMed PMC
Kao CY and Read LK (2007) Targeted depletion of a mitochondrial nucleotidyltransferase suggests the presence of multiple enzymes that polymerize mRNA 3’ tails in PubMed PMC
Missel A et al. (1997) Disruption of a gene encoding a novel mitochondrial DEAD-box protein in PubMed PMC
Li F et al. (2011) Trypanosome REH1 is an RNA helicase involved with the 3’−5’ polarity of multiple gRNA-guided uridine insertion/deletion RNA editing. Proc. Natl. Acad. Sci. U. S. A 108, 3542–3547 PubMed PMC
Koller J et al. (1997) PubMed
Blom D et al. (2001) Cloning and characterization of two guide RNA-binding proteins from mitochondria of Crithidia fasciculata: gBP27, a novel protein, and gBP29, the orthologue of PubMed PMC
Zikova A et al. (2008) Structure and function of the native and recombinant mitochondrial MRP1/MRP2 complex from PubMed PMC
Schumacher MA et al. (2006) Crystal structures of PubMed
Muller UF and Goringer HU (2002) Mechanism of the gBP21-mediated RNA/RNA annealing reaction: matchmaking and charge reduction. Nucleic Acids Res. 30, 447–455 PubMed PMC
Muller UF et al. (2001) Annealing of RNA editing substrates facilitated by guide RNA-binding protein gBP21. EMBO J. 20, 1394–1404 PubMed PMC
Tylec BL et al. (2019) Intrinsic and regulated properties of minimally edited trypanosome mRNAs. Nucleic Acids Res. 47, 3640–3657 PubMed PMC
Fisk JC et al. (2009) Distinct and overlapping functions of MRP1/2 and RBP16 in mitochondrial RNA metabolism. Mol. Cell. Biol 29, 5214–5225 PubMed PMC
Vondruskova E et al. (2005) RNA interference analyses suggest a transcript-specific regulatory role for mitochondrial RNA-binding proteins MRP1 and MRP2 in RNA editing and other RNA processing in PubMed
Hayman ML and Read LK (1999) PubMed
Ammerman ML et al. (2008) gRNA/pre-mRNA annealing and RNA chaperone activities of RBP16. RNA 14, 1069–1080 PubMed PMC
Miller MM et al. (2006) RBP16 stimulates trypanosome RNA editing PubMed PMC
Pelletier M and Read LK (2003) RBP16 is a multifunctional gene regulatory protein involved in editing and stabilization of specific mitochondrial mRNAs in PubMed PMC
Miller MM and Read LK (2003) PubMed
Vanhamme L et al. (1998) PubMed
Hashimi H et al. (2008) TbRGG1, an essential protein involved in kinetoplastid RNA metabolism that is associated with a novel multiprotein complex. RNA 14, 970–980 PubMed PMC
McAdams NM et al. (2015) An arginine-glycine-rich RNA binding protein impacts the abundance of specific mRNAs in the mitochondria of PubMed PMC
Shaw PL et al. (2015) Structures of the T. PubMed PMC
Madison-Antenucci S and Hajduk SL (2001) RNA editing-associated protein 1 is an RNA binding protein with specificity for preedited mRNA. Mol. Cell 7, 879–886 PubMed
Madison-Antenucci S et al. (1998) Kinetoplastid RNA-editing associated protein 1 (REAP-1): a novel editing complex protein with repetitive domains. EMBO J. 17, 6368–6376 PubMed PMC
Hans J et al. (2007) RNA-editing-associated protein 1 null mutant reveals link to mitochondrial RNA stability. RNA 13, 881–889 PubMed PMC
Dixit S and Lukes J (2018) Combinatorial interplay of RNA binding proteins tunes levels of mitochondrial mRNA in trypanosomes. RNA 24, 1594–1606 PubMed PMC
Zimmer SL et al. (2011) A novel member of the RNase D exoribonuclease family functions in mitochondrial guide RNA metabolism in PubMed PMC
Taschner A et al. (2012) Nuclear RNase P of PubMed PMC
Salavati R et al. (2001) Mitochondrial ribonuclease P activity of PubMed
Kapushoc ST et al. (2002) Differential localization of nuclear encoded tRNAs between the cytosol and mitochondrion in PubMed PMC
Kapushoc ST et al. (2000) End processing precedes mitochondrial importation and editing of tRNAs in PubMed
Rajappa-Titu L et al. (2016) RNA Editing TUTase 1: structural foundation of substrate recognition, complex interactions and drug targeting. Nucleic Acids Res. 44, 10862–10878 PubMed PMC
Mattiacio JL and Read LK (2009) Evidence for a degradosome-like complex in the mitochondria of PubMed PMC
Mingler MK et al. (2006) Identification of pentatricopeptide repeat proteins in PubMed
Pusnik M et al. (2007) Pentatricopeptide repeat proteins in PubMed PMC
Trotter JR et al. (2005) A deletion site editing endonuclease in PubMed
Carnes J et al. (2005) An essential RNase III insertion editing endonuclease in PubMed PMC
Drozdz M et al. (2002) TbMP81 is required for RNA editing in PubMed PMC
McDermott SM et al. (2015) Differential editosome protein function between life cycle stages of PubMed PMC
Salavati R et al. (2006) KREPA4, an RNA binding protein es- sential for editosome integrity and survival of PubMed PMC
Law JA et al. (2007) In PubMed PMC
Tarun SZ Jr. et al. (2008) KREPA6 is an RNA-binding protein essential for editosome integrity and survival of PubMed PMC
McDermott SM et al. (2015) Identification by random mutagenesis of functional domains in KREPB5 that differentially af- fect RNA editing between life cycle stages of PubMed PMC
Carnes J et al. (2018) RNase III domain of KREPB9 and KREPB10 association with editosomes in PubMed PMC
Acestor N et al. (2009) The MRB1 complex functions in kinetoplastid RNA processing. RNA 15, 277–286 PubMed PMC
Ammerman ML et al. (2013) A core MRB1 complex component is indispensable for RNA editing in insect and human infective stages of PubMed PMC
Ammerman ML et al. (2011) MRB3010 is a core component of the MRB1 complex that facilitates an early step of the kinetoplastid RNA editing process. RNA 17, 865–877 PubMed PMC
Kafkova L et al. (2012) Functional characterization of two paralogs that are novel RNA binding proteins influencing mitochondrial transcripts of PubMed PMC
Fisk JC et al. (2008) TbRGG2, an essential RNA editing accessory factor in two PubMed PMC
Foda BM et al. (2012) Multifunctional G-rich and RRM containing domains of TbRGG2 perform separate yet essential functions in trypanosome RNA editing. Eukaryot. Cell 11, 1119–1131 PubMed PMC
Travis B et al. (2019) The RRM of the kRNA-editing protein TbRGG2 uses multiple surfaces to bind and remodel RNA. Nucleic Acids Res. 47, 2130–2142 PubMed PMC
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