Linear discriminant function analysis
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Recent techniques of image analysis brought the possibility to recognize subjects based on discriminative image features. We performed a magnetic resonance imaging (MRI)-based classification study to assess its usefulness for outcome prediction of first-episode schizophrenia patients (FES). We included 39 FES patients and 39 healthy controls (HC) and performed the maximum-uncertainty linear discrimination analysis (MLDA) of MRI brain intensity images. The classification accuracy index (CA) was correlated with the Positive and Negative Syndrome Scale (PANSS) and the Global Assessment of Functioning scale (GAF) at 1-year follow-up. The rate of correct classifications of patients with poor and good outcomes was analyzed using chi-square tests. MLDA classification was significantly better than classification by chance. Leave-one-out accuracy was 72%. CA correlated significantly with PANSS and GAF scores at the 1-year follow-up. Moreover, significantly more patients with poor outcome than those with good outcome were classified correctly. MLDA of brain MR intensity features is, therefore, able to correctly classify a significant number of FES patients, and the discriminative features are clinically relevant for clinical presentation 1 year after the first episode of schizophrenia. The accuracy of the current approach is, however, insufficient to be used in clinical practice immediately. Several methodological issues need to be addressed to increase the usefulness of this classification approach.
- MeSH
- diskriminační analýza MeSH
- dospělí MeSH
- lidé MeSH
- lineární modely MeSH
- magnetická rezonanční tomografie metody MeSH
- mapování mozku MeSH
- mladý dospělý MeSH
- mozek patologie MeSH
- počítačové zpracování obrazu metody MeSH
- psychiatrické posuzovací škály MeSH
- schizofrenie diagnóza MeSH
- Check Tag
- dospělí MeSH
- lidé MeSH
- mladý dospělý MeSH
- mužské pohlaví MeSH
- Publikační typ
- časopisecké články MeSH
The hyoid bone is characterized by sexually dimorphic features, enabling it to occasionally be used in the sex determination aspect of establishing the biological profile in skeletal remains. Based on a sample of 298 fused and non-fused hyoid bones, the present paper compares several methodological approaches to sexing human hyoid bones in order to test the legitimacy of osteometrics-based linear discriminant equations and to explore the potentials of symbolic regression and methods of geometric morphometrics. In addition, two sets of published predictive models, one of which originated in an indigenous population, were validated on the studied sample. The results showed that the hyoid shape itself is a moderate sex predictor and a combination of linear measurements is a better representation of sex-related differences. The symbolic regression was shown to exceed the predictive powers of linear discriminant function analysis when two models based on a logistic and step regression reached 96% of correctly classified cases. There was a positive correlation between discriminant scores and an individual's age as the sex assessment was highly skewed in favour of males. This suggests that the human hyoid undergoes age-related modifications which facilitates determination of male bones and complicates determination of females in older individuals. The validation of discriminant equations by Komenda and Černý (1990) and Kindschud et al. (2010) revealed that there are marked inter-population and inter-sample differences which lessened the power to correctly determine female hyoid bones.
- MeSH
- analýza rozptylu MeSH
- diskriminační analýza MeSH
- dospělí MeSH
- lidé středního věku MeSH
- lidé MeSH
- lineární modely MeSH
- mladý dospělý MeSH
- multivariační analýza MeSH
- odchylka pozorovatele MeSH
- os hyoideum anatomie a histologie MeSH
- reprodukovatelnost výsledků MeSH
- senioři nad 80 let MeSH
- senioři MeSH
- software MeSH
- soudní antropologie MeSH
- určení pohlaví podle kostry metody MeSH
- zobrazování trojrozměrné MeSH
- Check Tag
- dospělí MeSH
- lidé středního věku MeSH
- lidé MeSH
- mladý dospělý MeSH
- mužské pohlaví MeSH
- senioři nad 80 let MeSH
- senioři MeSH
- ženské pohlaví MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
... revised and updated -- In the twenty years since publication of the first edition of The Statistical Analysis ... ... classic text with these and other current developments in the second edition of The Statistical Analysis ... ... of Recurrent Event Data Analysis of Correlated Failure Time Data -- With its comprehensive survey of ... ... the field and resources tor students and researchers, The Statistical Analysis of Failure Time Data ... ... Regression Models, 68 -- 3.7 Illustrations in More Complex Data Sets, 70 -- 3.8 Discrimination Among ...
Wiley series in probability and statistics
2nd ed. xiii, 439 s.
- Klíčová slova
- Analýza dat, Analýza statistická, Regrese,
- Konspekt
- Statistika
- NLK Obory
- statistika, zdravotnická statistika
BACKGROUND: There is initial evidence suggesting that biomarker neurogranin (Ng) may distinguish Alzheimer's disease (AD) from other neurodegenerative diseases. Therefore, we assessed (a) the discriminant ability of cerebrospinal fluid (CSF) Ng levels to distinguish between AD and frontotemporal lobar degeneration (FTLD) pathology and between different stages within the same disease, (b) the relationship between Ng levels and cognitive performance in both AD and FTLD pathology, and (c) whether CSF Ng levels vary by apolipoprotein E (APOE) polymorphism in the AD continuum. METHODS: Participants with subjective cognitive decline (SCD) (n = 33), amnestic mild cognitive impairment (aMCI) due to AD (n = 109), AD dementia (n = 67), MCI due to FTLD (n = 25), and FTLD dementia (n = 29) were recruited from the Czech Brain Aging Study. One-way analysis of covariance (ANCOVA) assessed Ng levels in diagnostic subgroups. Linear regressions evaluated the relationship between CSF Ng levels, memory scores, and APOE polymorphism. RESULTS: Ng levels were higher in aMCI-AD patients compared to MCI-FTLD (F[1, 134] = 15.16, p < .001), and in AD-dementia compared to FTLD-dementia (F[1, 96] = 4.60, p = .029). Additionally, Ng levels were higher in FTLD-dementia patients compared to MCI-FTLD (F[1, 54]= 4.35, p = .034), lower in SCD participants compared to aMCI-AD (F[1, 142] = 10.72, p = .001) and AD-dementia (F[1, 100] = 20.90, p < .001), and did not differ between SCD participants and MCI-FTLD (F[1, 58]= 1.02, p = .491) or FTLD-dementia (F[1, 62]= 2.27, p = .051). The main effect of diagnosis across the diagnostic subgroups on Aβ1-42/Ng ratio was significant too (F[4, 263]=, p < .001). We found a non-significant association between Ng levels and memory scores overall (β=-0.25, p = .154) or in AD diagnostic subgroups, and non-significant differences in this association between overall AD APOE ε4 carriers and non-carriers (β=-0.32, p = .358). CONCLUSIONS: In this first study to-date to assess MCI and dementia due to AD or FTLD within one study, elevated CSF Ng appears to be an early biomarker of AD-related impairment, but its role as a biomarker appears to diminish after dementia diagnosis, whereby dementia-related underlying processes in AD and FTLD may begin to merge. The Aβ1-42/Ng ratio discriminated AD from FTLD patients better than Ng alone. CSF Ng levels were not related to memory in AD or FTLD, suggesting that Ng may be a marker of the biological signs of disease state rather than cognitive deficits.
- MeSH
- Alzheimerova nemoc * mozkomíšní mok diagnóza MeSH
- amyloidní beta-protein mozkomíšní mok MeSH
- apolipoproteiny E genetika mozkomíšní mok MeSH
- biologické markery * mozkomíšní mok MeSH
- frontotemporální lobární degenerace * mozkomíšní mok diagnóza MeSH
- kognitivní dysfunkce * mozkomíšní mok diagnóza MeSH
- lidé středního věku MeSH
- lidé MeSH
- neurogranin * mozkomíšní mok MeSH
- neuropsychologické testy MeSH
- průřezové studie MeSH
- senioři nad 80 let MeSH
- senioři MeSH
- Check Tag
- lidé středního věku MeSH
- lidé MeSH
- mužské pohlaví MeSH
- senioři nad 80 let MeSH
- senioři MeSH
- ženské pohlaví MeSH
- Publikační typ
- časopisecké články MeSH
Cíle: Cílem této studie bylo zhodnotit analýzu textury (AT) na snímcích MR před podáním kontrastní látky z hlediska zlepšení přesnosti a rozlišení jemných rozdílů mezi enhancujícími lézemi (EL), neenhancujícími lézemi (NEL) a perzistentními černými dírami (persistant black holes; PBH). Materiál a metodika: Databáze zobrazení MR zahrnovala 90 pacientů, z nichž 30 mělo pouze PBH, 25 mělo pouze EL a 35 nemělo ani EL ani PBH. Tato zobrazení byla zhodnocena pomocí navrhované metody AT. Bylo extrahováno na 300 statistických texturních znaků jako deskriptorů každého ROI/léze. Byly analyzovány rozdíly mezi skupinami lézí a byla změřena plocha pod křivkou (Az) pro každý významný texturní znak. K analýze signifikantních znaků a ke zvýšení síly odlišení byla použita lineární diskriminantní analýza (LDA). Výsledky: Nejméně 14 texturních znaků prokázalo významný rozdíl mezi NEL a EL, NEL a PBH a EL a PBH. Při použití všech významných znaků naznačila LDA slibnou schopnost klasifikace NEL a PBH s hodnotou Az 0,975, která odpovídá senzitivitě 94,3 %, specificitě 96,3 % a přesnosti 95,5 %. U klasifikace EL a NEL (nebo PBH) prokázala LDA diskriminační výkon odpovídající senzitivitě, specificitě a přesnosti 100 % a Az 1. Závěry: AT byla vyhodnocena jako spolehlivá metoda s potenciálem charakterizovat NEL, EL a PBH a jako metoda, kterou mohou lékaři použít k rozlišení NEL, EL a PBH na snímcích MR před podáním kontrastní látky.
Aims: The aim of this study was to evaluate texture analysis (TA) in pre-contrast injection MR images to improve accuracy and to identify subtle differences between enhancing lesions (ELs), non-enhancing lesions (NELs) and persistent black holes (PBHs). Materials and methodology: The MR image database comprised 90 patients; 30 of whom had only PBHs, 25 had only ELs and 35 neither EL or PBH. These were assessed by the proposed TA method. Up to 300 statistical texture features were extracted as descriptors for each ROI/lesion. Differences between the lesion groups were analyzed and evaluations were made for area under the receiver operating characteristic curve (Az) for each significant texture feature. Linear discriminant analysis (LDA) was employed to analyze significant features and increase power of discrimination. Results: At least 14 texture features showed significant difference between NELs and ELs, NELs and PBHs, and ELs and PBHs. By using all significant features, LDA indicated a promising level of performance for classification of NELs and PBHs with Az value of 0.975 that corresponds to sensitivity of 94.3%, specificity of 96.3%, accuracy of 95.5%. In classification of ELs and NELs (or PBH), LDA demonstrated discrimination performance with sensitivity, specificity and accuracy of 100% and Az of 1. Conclusions: TA was determined as a reliable method, with potential for characterization and the method can be applied by physicians to differentiate NELs, ELs and PBH in pre-contrast injection MRI imaging.
- MeSH
- interpretace statistických dat MeSH
- kontrastní látky MeSH
- lidé MeSH
- magnetická rezonanční tomografie metody MeSH
- mozek diagnostické zobrazování MeSH
- neurogenní zánět MeSH
- počítačové zpracování obrazu * klasifikace MeSH
- ROC křivka MeSH
- roztroušená skleróza * diagnostické zobrazování diagnóza MeSH
- senzitivita a specificita MeSH
- Check Tag
- lidé MeSH
... Models 183 -- 7.1 Functions for Generalized Linear Modelling 187 -- 7.2 Binomial Data 190 -- 7.3 Poisson ... ... 212 -- 8.3 Non-Linear Fitted Model Objects and Method Functions 217 -- 8.4 Confidence Intervals for ... ... Linear Mixed Models 292 -- 10.5 GEE Models 299 -- 11 Exploratory Multivariate Analysis 301 -- 11.1 Visualization ... ... Methods 302 -- 11.2 Cluster Analysis 315 -- 11.3 Factor Analysis 321 -- 11.4 Discrete Multivariate Analysis ... ... 325 -- 12 Classification 331 -- 12.1 Discriminant Analysis 331 -- 12.2 Classification Theory 338 -- ...
Statistics and computing
4th ed. xi, 495 s. : il.
We investigated a combination of three classification algorithms, namely the modified maximum uncertainty linear discriminant analysis (mMLDA), the centroid method, and the average linkage, with three types of features extracted from three-dimensional T1-weighted magnetic resonance (MR) brain images, specifically MR intensities, grey matter densities, and local deformations for distinguishing 49 first episode schizophrenia male patients from 49 healthy male subjects. The feature sets were reduced using intersubject principal component analysis before classification. By combining the classifiers, we were able to obtain slightly improved results when compared with single classifiers. The best classification performance (81.6% accuracy, 75.5% sensitivity, and 87.8% specificity) was significantly better than classification by chance. We also showed that classifiers based on features calculated using more computation-intensive image preprocessing perform better; mMLDA with classification boundary calculated as weighted mean discriminative scores of the groups had improved sensitivity but similar accuracy compared to the original MLDA; reducing a number of eigenvectors during data reduction did not always lead to higher classification accuracy, since noise as well as the signal important for classification were removed. Our findings provide important information for schizophrenia research and may improve accuracy of computer-aided diagnostics of neuropsychiatric diseases.
- MeSH
- algoritmy MeSH
- diagnóza počítačová metody MeSH
- diskriminační analýza MeSH
- dospělí MeSH
- lidé MeSH
- magnetická rezonanční tomografie metody MeSH
- mladiství MeSH
- mladý dospělý MeSH
- schizofrenie diagnóza MeSH
- senzitivita a specificita MeSH
- Check Tag
- dospělí MeSH
- lidé MeSH
- mladiství MeSH
- mladý dospělý MeSH
- mužské pohlaví MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
In this study we tested classification performance of a sex estimation method from the mandible originally developed by Sella-Tunis et al. (2017) on a heterogeneous Israeli population. Mandibular linear dimensions were measured on 60 CT scans derived from the Czech living population. Classification performance of Israeli discriminant functions (DFs-IL) was analyzed in comparison with calculated Czech discriminant functions (DFs-CZ) while different posterior probability thresholds (currently discussed in the forensic literature) were employed. Our results comprehensively illustrate sensitivity of different discriminant functions to population differences in body size and degree of sexual dimorphism. We demonstrate that the error rate may be biased when presented per posterior probability threshold. DF-IL 1 showed least sensitivity to population origin and fulfilled criteria of sufficient classification performance when applied on the Czech sample with a minimum posterior probability threshold of 0.88 reaching overall accuracy ≥ 95%, zero sex bias, and 80% of classified individuals. The last parameter was higher in DF-CZ 1 which was the main difference between those two DFs suggesting relatively low dependance on population origin. As the use of population-specific methods is often prevented by complicated assessment of population origin, DF-IL 1 is a candidate for a sufficiently robust method that could be reliably applied outside the reference sample, and thus, its classification performance deserves further testing on more population samples.
- MeSH
- diskriminační analýza MeSH
- dospělí MeSH
- lidé středního věku MeSH
- lidé MeSH
- mandibula * diagnostické zobrazování anatomie a histologie MeSH
- mladý dospělý MeSH
- počítačová rentgenová tomografie MeSH
- pravděpodobnost * MeSH
- senioři MeSH
- soudní antropologie metody MeSH
- určení pohlaví podle kostry * metody MeSH
- Check Tag
- dospělí MeSH
- lidé středního věku MeSH
- lidé MeSH
- mladý dospělý MeSH
- mužské pohlaví MeSH
- senioři MeSH
- ženské pohlaví MeSH
- Publikační typ
- časopisecké články MeSH
- Geografické názvy
- Česká republika MeSH
Recently, a specific role of nonlinear dynamics and complexity in neural and cognitive processes has been proposed, and there are several reported studies suggesting that smokers might display characteristic changes in the EEG dimensional complexity in comparison to non-smokers. With the aim to extend these findings to autonomic activity, we have examined dimensional complexity in bilateral electrodermal activity (EDA) that reflects limbic modulation influences and may provide information on specific emotional processes related to sympathetic activity. In the present study EDA was assessed in 35 smokers (mean age 23.4, SD=1.4) and 41 non-smokers (mean age 23.2, SD=1.8) during resting conditions. Calculation of dimensional complexity in both groups similarly as in previous reported studies was performed using an algorithm for pointwise correlation dimension (PD2). The results of nonlinear and statistical analysis of EDA records indicate increased complexity during rest conditions (indexed by PD2) in smokers compared to non-smokers (Mann-Whitney test; p<0.01), even though EDA measurement does not discriminate the groups (Mann-Whitney test; p>0.05). These results present a first supportive evidence that EDA complexity may exhibit an electrophysiological marker that could potentially explain the role of complex dynamics in the autonomic nervous system related to smoking habits and addiction.
- MeSH
- algoritmy MeSH
- dospělí MeSH
- elektrická stimulace metody přístrojové vybavení MeSH
- elektroencefalografie MeSH
- financování organizované MeSH
- galvanická kožní odpověď fyziologie MeSH
- interpretace statistických dat MeSH
- kognice fyziologie účinky léků MeSH
- kouření patofyziologie MeSH
- limbický systém fyziologie účinky léků MeSH
- mozek fyziologie účinky léků MeSH
- nelineární dynamika MeSH
- pozornost fyziologie účinky léků MeSH
- reakční čas fyziologie MeSH
- senzitivita a specificita MeSH
- studie případů a kontrol MeSH
- Check Tag
- dospělí MeSH
- mužské pohlaví MeSH
- ženské pohlaví MeSH
INTRODUCTION: In a recent publication, the phasegram, a bifurcation diagram over time, has been introduced as an intuitive visualization tool for assessing the vibratory states of oscillating systems. Here, this nonlinear dynamics approach is augmented with quantitative analysis parameters, and it is applied to clinical laryngeal high-speed video (HSV) endoscopic recordings of healthy and pathological phonations. METHODS: HSV data from a total of 73 females diagnosed as healthy (n = 42), or with functional dysphonia (n = 15) or with unilateral vocal fold paralysis (n = 16), were quantitatively analyzed. Glottal area waveforms (GAW) and left and right hemi-GAWs (hGAW) were extracted from the HSV recordings. Based on Poincaré sections through phase space-embedded signals, two novel quantitative parameters were computed: the phasegram entropy (PE) and the phasegram complexity estimate (PCE), inspired by signal entropy and correlation dimension computation, respectively. RESULTS: Both PE and PCE assumed higher average values (suggesting more irregular vibrations) for the pathological as compared with the healthy participants, thus significantly discriminating healthy group from the paralysis group (P = 0.02 for both PE and PCE). Comparisons of individual PE or PCE data for the left and the right hGAW within each subject resulted in asymmetry measures for the regularity of vocal fold vibration. The PCE-based asymmetry measure revealed significant differences between the healthy group and the paralysis group (P = 0.03). CONCLUSIONS: Quantitative phasegram analysis of GAW and hGAW data is a promising tool for the automated processing of HSV data in research and in clinical practice.
- MeSH
- audiovizuální záznam metody MeSH
- automatizace MeSH
- biomechanika MeSH
- časové faktory MeSH
- dospělí MeSH
- dysfonie diagnóza patofyziologie MeSH
- entropie MeSH
- fonace * MeSH
- hlasové řasy patofyziologie MeSH
- interpretace obrazu počítačem metody MeSH
- kvalita hlasu * MeSH
- laryngoskopie metody MeSH
- lidé středního věku MeSH
- lidé MeSH
- nelineární dynamika MeSH
- ochrnutí hlasivek diagnóza patofyziologie MeSH
- periodicita MeSH
- prediktivní hodnota testů MeSH
- senioři MeSH
- studie případů a kontrol MeSH
- vibrace MeSH
- Check Tag
- dospělí MeSH
- lidé středního věku MeSH
- lidé MeSH
- senioři MeSH
- ženské pohlaví MeSH
- Publikační typ
- audiovizuální média MeSH
- časopisecké články MeSH