• MeSH
• statistika jako téma MeSH

• Konspekt
• Statistika
• NLK Obory
• statistika, zdravotnická statistika

We have developed a method to longitudinally classify subjects into two or more prognostic groups using longitudinally observed values of markers related to the prognosis. We assume the availability of a training data set where the subjects' allocation into the prognostic group is known. The proposed method proceeds in two steps as described earlier in the literature. First, multivariate linear mixed models are fitted in each prognostic group from the training data set to model the dependence of markers on time and on possibly other covariates. Second, fitted mixed models are used to develop a discrimination rule for future subjects. Our method improves upon existing approaches by relaxing the normality assumption of random effects in the underlying mixed models. Namely, we assume a heteroscedastic multivariate normal mixture for random effects. Inference is performed in the Bayesian framework using the Markov chain Monte Carlo methodology. Software has been written for the proposed method and it is freely available. The methodology is applied to data from the Dutch Primary Biliary Cirrhosis Study.

• MeSH
• biliární cirhóza farmakoterapie   MeSH
• biologické markery analýza   MeSH
• cholagoga a choleretika terapeutické užití   MeSH
• diskriminační analýza MeSH
• interpretace statistických dat MeSH
• kyselina ursodeoxycholová terapeutické užití   MeSH
• lidé MeSH
• lineární modely MeSH
• longitudinální studie MeSH
• počítačová simulace MeSH
• progrese nemoci MeSH
• Check Tag
• lidé MeSH
• Publikační typ
• časopisecké články MeSH
• práce podpořená grantem MeSH

Models based on ordinary differential equations (ODE) are widespread tools for describing dynamical systems. In biomedical sciences, data from each subject can be sparse making difficult to precisely estimate individual parameters by standard non-linear regression but information can often be gained from between-subjects variability. This makes natural the use of mixed-effects models to estimate population parameters. Although the maximum likelihood approach is a valuable option, identifiability issues favour Bayesian approaches which can incorporate prior knowledge in a flexible way. However, the combination of difficulties coming from the ODE system and from the presence of random effects raises a major numerical challenge. Computations can be simplified by making a normal approximation of the posterior to find the maximum of the posterior distribution (MAP). Here we present the NIMROD program (normal approximation inference in models with random effects based on ordinary differential equations) devoted to the MAP estimation in ODE models. We describe the specific implemented features such as convergence criteria and an approximation of the leave-one-out cross-validation to assess the model quality of fit. In pharmacokinetics models, first, we evaluate the properties of this algorithm and compare it with FOCE and MCMC algorithms in simulations. Then, we illustrate NIMROD use on Amprenavir pharmacokinetics data from the PUZZLE clinical trial in HIV infected patients.

• MeSH
• algoritmy MeSH
• Bayesova věta MeSH
• HIV infekce farmakoterapie   MeSH
• karbamáty farmakokinetika   MeSH
• klinické zkoušky jako téma MeSH
• látky proti HIV farmakokinetika   MeSH
• lidé MeSH
• monitorování léčiv přístrojové vybavení   metody   MeSH
• pravděpodobnostní funkce MeSH
• reprodukovatelnost výsledků MeSH
• software * MeSH
• statistické modely MeSH
• sulfonamidy farmakokinetika   MeSH
• Check Tag
• lidé MeSH
• Publikační typ
• časopisecké články MeSH

In this work, we have investigated retention of maltooligosaccharides and their fluorescent derivatives in hydrophilic interaction liquid chromatography using four different stationary phases. The non-derivatized maltooligosaccharides (maltose to maltoheptaose) and their derivatives with 2-aminobenzoic acid, 2-aminobenzamide, 2-aminopyridine and 8-aminonaphthalene-1,3,6-trisulfonic acid were analyzed on silica gel, aminopropyl silica, amide (carbamoyl-bonded silica) and ZIC-HILIC zwitterionic sulfobetain bonded phase. The partitioning of the analytes between the bulk mobile phase and adsorbed water-rich layer, polar and ionic interactions of analytes with stationary phase have been evaluated and compared. The effects of the mobile phase additives (0.1% (v/v) of acetic acid and ammonium acetate in concentration range 5-30 mmol L(-1)) on retention were described. The suitability of different models for prediction of retention was tested including linear solvent strength model, quadratic model, mixed-mode model, and empirical Neue-Kuss model. The mixed-mode model was extended to the parameter describing the contribution of monomeric glucose unit to the retention of non-derivatized and derivatized maltooligosaccharides, which was used for evaluation of contribution of both, oligosaccharide backbone and end-group to retention.

• MeSH
• 1-naftylamin chemie   MeSH
• adsorpce MeSH
• aminopyridiny chemie   MeSH
• chemické modely * MeSH
• chemické techniky analytické * MeSH
• chromatografie kapalinová * MeSH
• hydrofobní a hydrofilní interakce MeSH
• oligosacharidy chemie   izolace a purifikace   MeSH
• ortoaminobenzoáty chemie   MeSH
• oxid křemičitý chemie   MeSH
• Publikační typ
• časopisecké články MeSH
• práce podpořená grantem MeSH

BACKGROUND AND AIMS: Spotted knapweed (Centaurea stoebe s.l., Asteraceae) is native to Europe, where it occurs as a diploid (2xEU) and tetraploid cytotype (4xEU), but so far only the tetraploid has been reported in the introduced range in North America (4xNA). In previous studies, significant range shifts have been found towards drier climates in 4xEU compared with 2xEU, and in 4xNA when compared with the native range. In addition, 4x plants showed thicker leaves and reduced specific leaf area compared with 2x plants, suggesting higher drought tolerance in 4x plants. It is thus hypothesized that the 4x cytotype might be better pre-adapted to drought than the 2x, and the 4xNA better adapted than the 4xEU due to post-introduction selection. METHODS: Plants of the three geocytotypes (2xEU, 4xEU and 4xNA ), each represented by six populations, were subjected to three water treatments over 6 weeks in a greenhouse experiment. Plasticity and reaction norms of above- and below-ground biomasses and their ratio, survival rate, stomatal conductance and carbon isotope discrimination were analysed using linear and generalized linear mixed effect models. KEY RESULTS AND CONCLUSIONS: Above-ground and total biomasses of European tetraploids were slightly less affected by drought than those of European diploids, and 4xEU plants maintained higher levels of stomatal conductance under moderate drought than 4xNA plants, thus supporting the pre-adaptation but not the post-introduction evolution hypothesis. Plasticity indexes for most of the traits were generally higher in 2xEU and 4xNA than in 4xEU plants, but these differences were not or were only marginally significant. Interestingly, the effect of population origin and its interaction with treatment was more important than the effects of geocytotype and range. Population means for the control treatment showed several significant associations either with latitude or some aspect of climatic data, suggesting evolution of local adaptations, especially within the 2xEU and 4xEU geocytotypes.

• MeSH
• biomasa MeSH
• Centaurea fyziologie   MeSH
• fyziologická adaptace * MeSH
• lineární modely MeSH
• období sucha * MeSH
• podnebí MeSH
• populační dynamika MeSH
• regresní analýza MeSH
• voda MeSH
• zavlečené druhy * MeSH
• zeměpis MeSH
• Publikační typ
• časopisecké články MeSH
• práce podpořená grantem MeSH

KEY MESSAGE: The major quantitative trait loci associated with bunch weight and its component traits in the East African highland banana-breeding population are located on chromosome 3. Bunch weight increase is one of the major objectives of banana improvement programs, but little is known about the loci controlling bunch weight and its component traits. Here we report for the first time some genomic loci associated with bunch weight and its component traits in banana as revealed through a genome-wide association study. A banana-breeding population of 307 genotypes varying in ploidy was phenotyped in three locations under different environmental conditions, and data were collected on bunch weight, number of hands and fruits; fruit length and circumference; and diameter of both fruit and pulp for three crop cycles. The population was genotyped with genotyping by sequencing and 27,178 single nucleotide polymorphisms (SNPs) were generated. The association between SNPs and the best linear unbiased predictors of traits was performed with TASSEL v5 using a mixed linear model accounting for population structure and kinship. Using Bonferroni correction, false discovery rate, and long-range linkage disequilibrium (LD), 25 genomic loci were identified with significant SNPs and most were localized on chromosome 3. Most SNPs were located in genes encoding uncharacterized and hypothetical proteins, but some mapped to transcription factors and genes involved in cell cycle regulation. Inter-chromosomal LD of SNPs was present in the population, but none of the SNPs were significantly associated with the traits. The clustering of significant SNPs on chromosome 3 supported our hypothesis that fruit filling in this population was under control of a few quantitative trait loci with major effects.

• MeSH
• banánovník genetika   MeSH
• fenotyp MeSH
• genetické asociační studie MeSH
• genetické markery MeSH
• genotyp MeSH
• jednonukleotidový polymorfismus MeSH
• lineární modely MeSH
• lokus kvantitativního znaku * MeSH
• ovoce růst a vývoj   MeSH
• šlechtění rostlin * MeSH
• vazebná nerovnováha MeSH
• Publikační typ
• časopisecké články MeSH
• Geografické názvy
• východní Afrika MeSH

Maturation of trematode larval stages is expected to be temporally and spatially adapted to maximise the encounter with the adequate downstream host, i.e. the host, which will be infected by this parasite stage. Since studies on intramolluscan parasite maturation are scarce but important in the context of parasite transmission, the larval development inside sporocysts was monitored during upshore residency of the snail host Gibbula adansonii (Trochidae), i.e., from March to May (2011 and 2013), when these snails temporarily reside in the intertidal habitat of a Western Mediterranean lagoon (40° 37' 35″ N, 0° 44' 31″ E, Spain). Data on the relative quantity of different maturation stages of Cainocreadium labracis and Macvicaria obovata (Opecoelidae) parasitising the G. adansonii as well as on snail and sporocyst size were explored using linear models and linear mixed models. The effect of the trematodes on snail growth was shown to be species-specific, with snail and sporocyst size acting as proxies of the reproductive capacity of M. obovata but not that of C. labracis. The number of cercarial embryos and germinal balls did not show monthly variation in either parasite species, but a higher number of mature stages and the highest maturity index was found in April. Hence, during the snail's limited spawning-related presence in the upshore waters of the lagoon, continuous production and output of infectious cercariae was observed, which indicates a link between larval maturation and snail migration. The synchronization of snails, mature parasite transmission stages and downstream hosts in time and space guarantees a successful completion of the life cycle.

• MeSH
• cerkárie růst a vývoj   MeSH
• druhová specificita MeSH
• ekosystém MeSH
• hlemýždi parazitologie   MeSH
• interakce hostitele a parazita MeSH
• larva růst a vývoj   MeSH
• lineární modely MeSH
• migrace zvířat MeSH
• mořská voda MeSH
• oocysty MeSH
• roční období MeSH
• rozmnožování MeSH
• stadia vývoje MeSH
• Trematoda růst a vývoj   MeSH
• zvířata MeSH
• Check Tag
• zvířata MeSH
• Publikační typ
• časopisecké články MeSH
• práce podpořená grantem MeSH
• Geografické názvy
• Španělsko MeSH

INTRODUCTION: Sepsis is the main cause of morbidity and mortality in intensive care units and its early diagnosis is not straightforward. Many studies have evaluated the usefulness of various markers of infection, including C-reactive protein (CRP), which is the most accessible and widely used. CRP is of weak diagnostic value because of its low specificity; a better understanding of patterns of CRP levels associated with a particular form of infection may improve its usefulness as a sepsis marker. In the present article, we apply multilevel modeling techniques and mixed linear models to CRP-related data to assess the time course of CRP blood levels in association with clinical outcome in children with different septic conditions. METHODS: We performed a retrospective analysis of 99 patients with systemic inflammatory response syndrome, sepsis, or septic shock who were admitted to the Pediatric Critical Care Unit at the University Hospital, Brno. CRP blood levels were monitored for 10 days following the onset of the septic condition. The effect of different septic conditions and of the surgical or nonsurgical diagnosis on CRP blood levels was statistically analyzed using mixed linear models with a multilevel modeling approach. RESULTS: A significant effect of septic condition and diagnosis on the course of CRP levels was identified. In patients who did not progress to septic shock, CRP blood levels decreased rapidly after reaching peak values - in contrast to the values in patients with septic shock in whom CRP protein levels decreased slowly. Moreover, CRP levels in patients with a surgical diagnosis were higher than in patients with a nonsurgical condition. The magnitude of this additional elevation in surgical patients did not depend on the septic condition. CONCLUSION: Understanding the pattern of change in levels of CRP associated with a particular condition may improve its diagnostic and prognostic value in children with sepsis.

• MeSH
• analýza přežití MeSH
• biologické markery krev   MeSH
• C-reaktivní protein metabolismus   MeSH
• dítě MeSH
• financování organizované MeSH
• kojenec MeSH
• komorbidita MeSH
• lidé MeSH
• lineární modely MeSH
• mladiství MeSH
• novorozenec MeSH
• předškolní dítě MeSH
• rány a poranění epidemiologie   MeSH
• retrospektivní studie MeSH
• sepse epidemiologie   krev   MeSH
• Check Tag
• dítě MeSH
• kojenec MeSH
• lidé MeSH
• mladiství MeSH
• mužské pohlaví MeSH
• novorozenec MeSH
• předškolní dítě MeSH
• ženské pohlaví MeSH
• Geografické názvy
• Česká republika MeSH

Nest building is an important part of maternal behavior in domestic pigs. The aim of the study was to assess the effect of nesting material sawdust vs. straw on sow behavior 24 h before and after birth of the first piglet (BFP) and piglet production. Sows, housed in farrowing crates, were randomly divided into 2 treatments: sawdust (n = 12) and straw (n = 13). Sawdust and straw were provided during the pre- and parturient period; after parturition, straw was given to both experimental groups. The prepartum nesting period (the time interval between the first and last nest-building records, including all other activity and resting before BFP), the nesting records (number of nesting records), nesting duration (duration of all nesting records), the start and termination of nesting, and the frequency of prepartum postural changes were collected 24 h before BFP. After BFP, number of nesting records and time to first sucking of the litter were collected. Frequency of postural changes and duration of udder access were collected 24 h after BFP during 3 time periods (during parturition, from the end of parturition to 12 h after BFP, and 12 to 24 h after BFP) and the frequency of nursing during 2 time periods (from the end of parturition to 12 h after BFP, and 12 to 24 h after BFP). Piglet BW gain and mortality were estimated 24 h after BFP. Data were analyzed using PROC MIXED and the probability of the piglet mortality using PROC GENMOD in SAS. Nesting material did not affect (P > 0.10) most of sow prepartum nesting behavior and had no effect (P > 0.10) on the prepartum frequency of postural changes. Sows from the sawdust treatment had a longer nesting period (P < 0.05), and nest building tended to start sooner (P < 0.10) than in the straw treatment. Nesting material had only a small effect on later maternal behavior. Sows from the straw treatment tended to have more nesting records after BFP (P < 0.10). The frequency of postural changes was affected by the interaction (P < 0.01) between treatments and time period: sow from the straw treatment had more postural changes during parturition compared with other time periods and sawdust treatment. No effect (P > 0.10) of the nesting material on piglet BW gain and mortality was found. The results suggest that sawdust compared with straw as nesting material provided to sows before and through parturition does not negatively affect maternal behavior during the 24 h before and after parturition or piglet production. Therefore, sawdust can be recommended as a suitable nesting material for farrowing sows when straw is not available.

• MeSH
• audiovizuální záznam MeSH
• hnízdění MeSH
• lineární modely MeSH
• náhodné rozdělení MeSH
• novorozená zvířata MeSH
• porodní hmotnost MeSH
• prasata MeSH
• těhotenství MeSH
• velikost vrhu MeSH
• zvířata MeSH
• Check Tag
• těhotenství MeSH
• ženské pohlaví MeSH
• zvířata MeSH
• Publikační typ
• časopisecké články MeSH
• práce podpořená grantem MeSH
• srovnávací studie MeSH

OBJECTIVE: To develop a preoperative risk model, using endometrial biopsy results and clinical and ultrasound variables, to predict the individual risk of lymph-node metastases in women with endometrial cancer. METHODS: A mixed-effects logistic regression model for prediction of lymph-node metastases was developed in 1501 prospectively included women with endometrial cancer undergoing transvaginal ultrasound examination before surgery, from 16 European centers. Missing data, including missing lymph-node status, were imputed. Discrimination, calibration and clinical utility of the model were evaluated using leave-center-out cross validation. The predictive performance of the model was compared with that of risk classification from endometrial biopsy alone (high-risk defined as endometrioid cancer Grade 3/non-endometrioid cancer) or combined endometrial biopsy and ultrasound (high-risk defined as endometrioid cancer Grade 3/non-endometrioid cancer/deep myometrial invasion/cervical stromal invasion/extrauterine spread). RESULTS: Lymphadenectomy was performed in 691 women, of whom 127 had lymph-node metastases. The model for prediction of lymph-node metastases included the predictors age, duration of abnormal bleeding, endometrial biopsy result, tumor extension and tumor size according to ultrasound and undefined tumor with an unmeasurable endometrium. The model's area under the curve was 0.73 (95% CI, 0.68-0.78), the calibration slope was 1.06 (95% CI, 0.79-1.34) and the calibration intercept was 0.06 (95% CI, -0.15 to 0.27). Using a risk threshold for lymph-node metastases of 5% compared with 20%, the model had, respectively, a sensitivity of 98% vs 48% and specificity of 11% vs 80%. The model had higher sensitivity and specificity than did classification as high-risk, according to endometrial biopsy alone (50% vs 35% and 80% vs 77%, respectively) or combined endometrial biopsy and ultrasound (80% vs 75% and 53% vs 52%, respectively). The model's clinical utility was higher than that of endometrial biopsy alone or combined endometrial biopsy and ultrasound at any given risk threshold. CONCLUSIONS: Based on endometrial biopsy results and clinical and ultrasound characteristics, the individual risk of lymph-node metastases in women with endometrial cancer can be estimated reliably before surgery. The model is superior to risk classification by endometrial biopsy alone or in combination with ultrasound. Copyright © 2019 ISUOG. Published by John Wiley & Sons Ltd.

• MeSH
• dospělí MeSH
• endometroidní karcinom diagnostické zobrazování   sekundární   MeSH
• kohortové studie MeSH
• lidé středního věku MeSH
• lidé MeSH
• lineární modely MeSH
• lymfatické metastázy MeSH
• lymfatické uzliny MeSH
• nádory endometria diagnostické zobrazování   patologie   MeSH
• prospektivní studie MeSH
• rizikové faktory MeSH
• senioři nad 80 let MeSH
• senioři MeSH
• senzitivita a specificita MeSH
• staging nádorů MeSH
• ultrasonografie MeSH
• Check Tag
• dospělí MeSH
• lidé středního věku MeSH
• lidé MeSH
• senioři nad 80 let MeSH
• senioři MeSH
• ženské pohlaví MeSH
• Publikační typ
• časopisecké články MeSH
• práce podpořená grantem MeSH