polymorph prediction Dotaz Zobrazit nápovědu
Psychiatrie posledních let se stává medicínským oborem založeným na důkazech. Stále se nám však nedostává spolehlivých možností predikce, které by nám pomohly předpovídat riziko vzniku, průběh a výsledky léčby u závažných duševních nemocí, jako je schizofrenie Stávající modely predikce v psychiatrii lze rozdělit na modely tautologické, heuristické, irelevantní a logické. Logické modely predikce schizofrenie se soustřeďují na studie genetické, zobrazovacích metod (morfologické a funkční) a neuroendokrinní testy. Genetické studie hledají zejména příčiny onemocnění a farmakogenetické prediktory odpovědi na léčbu. Jedním z kandidátských genů je gen pro COMT s dobře známým polymorfizmem, popsaná je také geneticky podmíněná terapeutická odpověď na clozapin. Strukturální a funkční abnormity jsou obvykle spojovány s horším průběhem a nepříznivou odpovědí na léčbu. Neuroendokrinní studie sledují přímo či nepřímo pomocí stimulačních testů funkční stav neurotransmiterových systémů. Příkladem jsou prezentované výsledky d-fenfluraminového testu, který měří vztah mezi aktivitou serotoninergního systému a zlepšením po léčbě antipsychotiky u akutně nemocných se schizofrenií. Uvedené výsledky několika konkrétních studií jsou příkladem úspěšného modelu logické predikce v psychiatrii. Ukazuje se, že na teoretickém podkladě lze postavit hypotézu a následně ji testovat v experimentálních podmínkách. Aplikací zobrazovacích metod, genetických analýz a neuroendokrinních testů v klinické praxi můžeme individualizovat diagnostický a terapeutický přístup k pacientům.
Recently, psychiatry has become an evidence-based field of medicine. However, there is a lack of reliable predictions of risk of onset, course, and outcome for major psychiatric disorders, e.g. schizophrenia. Available prediction models in psychiatry are tautological, heuristic, logical, and irrelevant. Logical models of prediction in schizophrenia are based on genetic, neuroimaging (structural and functional), and neuroendocrine studies. Genetic research searches the causes of illness and pharmacogenetic predictors of treatment response. There are numerous studies of candidate gene encoding COMT polymorphism, or pharmacogenetics of response to clozapine. Neuroanatomical and functional abnormalities are generally associated with unfavorable course, outcome and treatment failure. Neuroendocrine studies measure directly or indirectly, using challenge tests, functional state of neurotransmitter systems. Results of d-fenfluramine challenge test investigating relationship between 5-HT system reactivity and response to antipsychotic treatment in young acute schizophrenia patients are presented. Examples of genetic, neuroimaging, and neuroendocrine studies represent models of successful logical prediction in psychiatry based on the solid theoretical background. Implementation of neuroimaging methods, genetic analyses, and neuroendocrine tests into the clinical practice, may help to individualize diagnostics and treatment of schizophrenia.
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- finanční podpora výzkumu jako téma MeSH
- financování organizované MeSH
- fluoruracil škodlivé účinky terapeutické užití toxicita MeSH
- geny MeSH
- lidé MeSH
- mutace účinky léků MeSH
- mutační analýza DNA statistika a číselné údaje MeSH
- nežádoucí účinky léčiv genetika MeSH
- protinádorové látky škodlivé účinky toxicita MeSH
- pyrimidiny metabolismus MeSH
- sloučeniny fluoru MeSH
- testy toxicity MeSH
- Check Tag
- lidé MeSH
OBJECTIVE: Prediction of coronary atherosclerosis in patients with stable angina based on non-invasive examinations. METHODS: Pro-inflammatory markers, heme oxygenase-1 (HO-1) polymorphism, lipid levels, Framingham risk score (FRS), and carotid ultrasound were analyzed and compared to grayscale and virtual histology intravascular ultrasound (VH-IVUS). RESULTS: A total of 101 patients were included, and genetic analysis was performed on 81 patients (80.2%). The HO-1 risk polymorphism was more frequent in patients post-myocardial infarction (61.3% vs 32%; P=.0097), or with diabetes (68.4% vs 35.5%; P=.011) or a higher FRS (21.5 vs 15.7; P=.014). Plaques in patients with the HO-1 risk polymorphism contained less fibro-fatty tissue (17.1% vs 23.2%; P=.005) and more necrotic core (NC; 17.1% vs 12.7%; P=.02) and calcification (10.2% vs 5.7%; P=.035) compared to patients without the HO-1 risk polymorphism. Carotid intima media thickness (P=.05) and carotid bulb plaque (P=.008) predicted plaque burden. The level of Apo A inversely correlated with NC (P=.047; r = -0.27) and was lower in patients with VH-thin-cap fibroatheroma (VH-TCFA; 1.19 mmol/L vs 1.3 mmol/L; P=.04). FRS correlated with NC (P=.007; r = 0.2), with angiographic disease severity (P=.032; r = 0.21) and was higher in patients with VH-TCFA (9.1 vs 7.8; P=.03). CONCLUSION: Carotid ultrasound and HO-1 polymorphism improve coronary atherosclerosis prediction.
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- apolipoproteiny A krev MeSH
- biologické markery MeSH
- fyzikální vyšetření MeSH
- genetická predispozice k nemoci epidemiologie MeSH
- hemoxygenasa-1 genetika MeSH
- intimomediální šíře tepenné stěny MeSH
- lidé středního věku MeSH
- lidé MeSH
- nemoci arterie carotis ultrasonografie MeSH
- nemoci koronárních tepen * epidemiologie genetika patologie MeSH
- polymorfismus genetický * MeSH
- prediktivní hodnota testů MeSH
- rizikové faktory MeSH
- senioři MeSH
- stabilní angina pectoris * diagnóza genetika patologie MeSH
- Check Tag
- lidé středního věku MeSH
- lidé MeSH
- mužské pohlaví MeSH
- senioři MeSH
- ženské pohlaví MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Research Support, N.I.H., Extramural MeSH
- srovnávací studie MeSH
OBJECTIVES: Our study aims to find the relationship between metabolic enzyme thiopurine S-methyltransferase (TPMT) gene polymorphisms and clinical output of the therapy with azathioprine. We focused on patients who experienced leucopenia caused by high blood levels of active azathioprine metabolites. DESIGN: Our group consists of 87 patients who have been treated by azathioprine. 21 individuals experienced leucopenia during treatment with standard dose of azathioprine. We have used PCR-REA and "real-time" PCR methods for genotype detection G238C, G460G and A719G substitutions in TPMT gene. RESULTS: We have found statistical association between the presence of non-standard TPMT alleles and adverse event associated with azathioprine treatment - leucopenia (p=0.0033). CONCLUSION: Our results confirm that TPMT genotyping prior to the treatment with azathioprine could predict patients with genetic predisposition for serious leucopenia and seems to be a useful genetic marker for individualisation of the therapy.
- MeSH
- alely MeSH
- azathioprin škodlivé účinky krev MeSH
- dospělí MeSH
- genetická predispozice k nemoci MeSH
- genotyp MeSH
- jednonukleotidový polymorfismus MeSH
- leukopenie chemicky indukované MeSH
- lidé MeSH
- methyltransferasy genetika MeSH
- polymerázová řetězová reakce MeSH
- polymorfismus genetický MeSH
- sekvenční analýza DNA MeSH
- Check Tag
- dospělí MeSH
- lidé MeSH
- mužské pohlaví MeSH
- ženské pohlaví MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
Polygenic risk scores (PRS) for epithelial ovarian cancer (EOC) have the potential to improve risk stratification. Joint estimation of Single Nucleotide Polymorphism (SNP) effects in models could improve predictive performance over standard approaches of PRS construction. Here, we implemented computationally efficient, penalized, logistic regression models (lasso, elastic net, stepwise) to individual level genotype data and a Bayesian framework with continuous shrinkage, "select and shrink for summary statistics" (S4), to summary level data for epithelial non-mucinous ovarian cancer risk prediction. We developed the models in a dataset consisting of 23,564 non-mucinous EOC cases and 40,138 controls participating in the Ovarian Cancer Association Consortium (OCAC) and validated the best models in three populations of different ancestries: prospective data from 198,101 women of European ancestries; 7,669 women of East Asian ancestries; 1,072 women of African ancestries, and in 18,915 BRCA1 and 12,337 BRCA2 pathogenic variant carriers of European ancestries. In the external validation data, the model with the strongest association for non-mucinous EOC risk derived from the OCAC model development data was the S4 model (27,240 SNPs) with odds ratios (OR) of 1.38 (95% CI: 1.28-1.48, AUC: 0.588) per unit standard deviation, in women of European ancestries; 1.14 (95% CI: 1.08-1.19, AUC: 0.538) in women of East Asian ancestries; 1.38 (95% CI: 1.21-1.58, AUC: 0.593) in women of African ancestries; hazard ratios of 1.36 (95% CI: 1.29-1.43, AUC: 0.592) in BRCA1 pathogenic variant carriers and 1.49 (95% CI: 1.35-1.64, AUC: 0.624) in BRCA2 pathogenic variant carriers. Incorporation of the S4 PRS in risk prediction models for ovarian cancer may have clinical utility in ovarian cancer prevention programs.
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- Bayesova věta MeSH
- epiteliální ovariální karcinom genetika MeSH
- genetická predispozice k nemoci MeSH
- jednonukleotidový polymorfismus MeSH
- lidé MeSH
- nádory prsu * MeSH
- nádory vaječníků * epidemiologie genetika MeSH
- prospektivní studie MeSH
- rizikové faktory MeSH
- Check Tag
- lidé MeSH
- mužské pohlaví MeSH
- ženské pohlaví MeSH
- Publikační typ
- časopisecké články MeSH
Although genetic variation at chromosome 9p21.3 is associated with incident cardiovascular disease, it is unclear whether screening for this polymorphism improves risk prediction. OBJECTIVE: To determine whether knowledge of variation at chromosome 9p21.3 provides predictive information beyond that from other readily available risk factors. DESIGN: Prospective cohort study. SETTING: United States. PATIENTS: 22 129 female white health professionals participating in the Women's Genome Health Study, initially without any major chronic disease, who were prospectively followed over a median of 10.2 years for incident cardiovascular disease. MEASUREMENTS: Polymorphism at rs10757274 in chromosome 9p21.3 and additional cardiovascular disease risk factors (blood pressure, smoking status, diabetes, blood levels of cholesterol, high-sensitivity C-reactive protein, and family history of premature myocardial infarction). RESULTS: Polymorphism at rs10757274 was associated with an adjusted hazard ratio for incident cardiovascular disease of 1.25 (95% CI, 1.04 to 1.51) for the AG genotype and 1.32 (CI, 1.07 to 1.63) for the GG genotype. However, the addition of the genotype to a prediction model based on traditional risk factors, high-sensitivity C-reactive protein, and family history of premature myocardial infarction had no effect on model discrimination as measured by the c-index (0.807 to 0.809) and did not improve the Net Reclassification Improvement score (-0.2%; P = 0.59) or the Integrated Discrimination Improvement score (0.0; P = 0.18). Limitation: Study participants were all white women. CONCLUSION: In this large prospective cohort of white women, genetic variation in chromosome 9p21.3 was associated with incident cardiovascular disease but did not improve on the discrimination or classification of predicted risk achieved with traditional risk factors, high-sensitivity C-reactive protein, and family history of premature myocardial infarction.
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- financování organizované MeSH
- genotyp MeSH
- jednonukleotidový polymorfismus MeSH
- Kaplanův-Meierův odhad MeSH
- kardiovaskulární nemoci epidemiologie genetika MeSH
- lidé středního věku MeSH
- lidé MeSH
- lidské chromozomy, pár 9 genetika MeSH
- následné studie MeSH
- pravděpodobnost MeSH
- proporcionální rizikové modely MeSH
- prospektivní studie MeSH
- rizikové faktory MeSH
- Check Tag
- lidé středního věku MeSH
- lidé MeSH
- ženské pohlaví MeSH
AIMS: The aim of the study was to investigate genetic variants predicting cardiovascular events in patients with dyslipidemia and compare its relationship with common risk factors including hyperlipidemia, metabolic syndrome, history of acute myocardial infarction, thrombosis, obesity, and smoking. MATERIALS AND METHODS: Five hundred two individuals divided into six groups corresponding with the risk factors and a control group of normolypidemic patients were analyzed for the presence of eight mutations and polymorphisms (endothelial nitric oxide synthase -786T → C and G894T; lymphotoxin A C804A; angiotensin-converting enzyme [ACE] ins/del; human platelet antigen 1 a/b; beta-fibrinogen -455G → A; apolipoprotein B [ApoB] R3500Q; APOE E2/E3/E4) using the ViennaLab CVD Strip assay. RESULTS: ACE deletions are the most frequent genetic variants in risk groups of dyslipidemic patients (from 58% in cardiovascular events to 51% in smokers). We found a strong relationship between genetic variants and risk factors. G894T is significantly associated with smoking (value of odds ratio [OR] = 1.62, p = 0.04), and ACE deletions are negatively associated with cardiovascular events (OR = 0.62, p = 0.03). CONCLUSION: Significant associations between genetic variants predicting cardiovascular events and common risk factors in dyslipidemic patients were found.
- MeSH
- angiotensin konvertující enzym genetika MeSH
- dospělí MeSH
- dyslipidemie genetika MeSH
- genetická predispozice k nemoci MeSH
- genetická variace MeSH
- genotyp MeSH
- kardiovaskulární nemoci genetika MeSH
- kouření genetika MeSH
- lidé středního věku MeSH
- lidé MeSH
- mladý dospělý MeSH
- mutace MeSH
- polymorfismus genetický MeSH
- prediktivní hodnota testů MeSH
- rizikové faktory MeSH
- senioři nad 80 let MeSH
- senioři MeSH
- synthasa oxidu dusnatého, typ III genetika MeSH
- Check Tag
- dospělí MeSH
- lidé středního věku MeSH
- lidé MeSH
- mladý dospělý MeSH
- mužské pohlaví MeSH
- senioři nad 80 let MeSH
- senioři MeSH
- ženské pohlaví MeSH
- Publikační typ
- časopisecké články MeSH
The purpose of our study was to evaluate a possible correlation between genetic polymorphisms in ATM and TGFB1 genes and late toxicity of chemoradiotherapy for locally advanced cervical cancer. Fifty five patients with FIGO stage IIB and higher without a disease recurrence with a mean follow up of 6 years were included. Late toxicity was assessed by EORTC/RTOG late toxicity criteria. Univariate and multivariate logistic regression model was used for statistical analysis. Degree of association between polymorphisms and late toxicity of chemotherapy was assessed on the basis of phi-coefficient () as well. We did not find any association between 5557G>A polymorphism in the ATM gene or single TGFB1 polymorphisms and late toxicity. TGFB1 compound homozygosity (-1552delAGG, -509C>T, L10P) was a significant predictive factor of grade III-IV and any grade of complications in both univariate and multivariate logistic regression analyses and statistical significance of association between polymorphisms and late toxicity of chemoradiotherapy was confirmed also by the evaluation of phi-coefficient (). We conclude that haplotypes instead of single nucleotide polymorphic sites in the genes may better characterize the individual radiosensitivity.
- MeSH
- ATM protein * genetika MeSH
- chemoradioterapie * škodlivé účinky MeSH
- dospělí MeSH
- haplotypy MeSH
- lidé středního věku MeSH
- lidé MeSH
- logistické modely MeSH
- nádory děložního čípku * genetika terapie MeSH
- polymorfismus genetický * MeSH
- senioři MeSH
- transformující růstový faktor beta1 * genetika MeSH
- Check Tag
- dospělí MeSH
- lidé středního věku MeSH
- lidé MeSH
- senioři MeSH
- ženské pohlaví MeSH
- Publikační typ
- práce podpořená grantem MeSH